Transcription Factor
| Accessions: | T025941_1.02 (CISBP 1.02), P97875 (JASPAR 2024) |
| Names: | Jdp2, T025941_1.02;, JDP2_MOUSE |
| Organisms: | Mus musculus |
| Libraries: | CISBP 1.02 1, JASPAR 2024 2 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | experiment type:PBM, family:bZIP |
| Length: | 163 |
| Pfam Domains: | 70-128 bZIP transcription factor 71-124 Basic region leucine zipper |
| Sequence: (in bold interface residues) | 1 MMPGQIPDPSVTAGSLPGLGPLTGLPSSALTTEELKYADIRNIGAMIAPLHFLEVKLGKR 60 61 PQPVKSELDEEEERRKRRREKNKVAAARCRNKKKERTEFLQRESERLELMNAELKTQIEE 120 121 LKLERQQLILMLNRHRPTCIVRTDSVRTPESEGNPLLEQLDKK |
| Interface Residues: | 41, 43, 78, 79, 82, 83, 85, 86, 89, 90, 93 |
| 3D-footprint Homologues: | 6fl1_A, 6rnr_A, 4pd2_A, 1skn_P, 2wt7_A, 7x5e_E, 4eot_A, 7x5e_F, 1nwq_C, 5t01_B, 5vpe_C, 5vpe_D |
| Binding Motifs: | PB0038.1 csgaTGACGTCAycry PB0142.1 mdkgrTGAsTCAymam M0302_1.02 grTGAcgyma M0303_1.02 gaTGACGYma |
| Publications: | Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed] |
| Related annotations: | PaperBLAST |
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