Transcription Factor

Accessions: Q93XM6 (JASPAR 2024), T03206 (AthalianaCistrome v4_May2016)
Names: AtbZIP21, bZIP transcription factor 21, Protein TGACG (TGA, TGA9_ARATH, Transcription factor TGA9, AT1G08320, T03206;, TGA9
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1, AthalianaCistrome v4_May2016 2
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Notes: ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:bZIP
Length: 481
Pfam Domains: 175-220 Basic region leucine zipper
177-218 bZIP transcription factor
258-336 Seed dormancy control
Sequence:
(in bold interface residues)
1 MANHRMSEATNHNHNHHLPYSLIHGLNNNHPSSGFINQDGSSSFDFGELEEAIVLQGVKY 60
61 RNEEAKPPLLGGGGGATTLEMFPSWPIRTHQTLPTESSKSGGESSDSGSANFSGKAESQQ 120
121 PESPMSSKHHLMLQPHHNNMANSSSTSGLPSTSRTLAPPKPSEDKRKATTSGKQLDAKTL 180
181 RRLAQNREAARKSRLRKKAYVQQLESSRIKLSQLEQELQRARSQGLFMGGCGPPGPNITS 240
241 GAAIFDMEYGRWLEDDNRHMSEIRTGLQAHLSDNDLRLIVDGYIAHFDEIFRLKAVAAKA 300
301 DVFHLIIGTWMSPAERCFIWMAGFRPSDLIKILVSQMDLLTEQQLMGIYSLQHSSQQAEE 360
361 ALSQGLEQLQQSLIDTLAASPVIDGMQQMAVALGKISNLEGFIRQADNLRQQTVHQLRRI 420
421 LTVRQAARCFLVIGEYYGRLRALSSLWLSRPRETLMSDETSCQTTTDLQIVQSSRNHFSN 480
481 F
Interface Residues: 186, 187, 189, 190, 193, 194
3D-footprint Homologues: 1dh3_C, 2dgc_A
Binding Motifs: M0205 / MA1348.1 GmTGACGTCAy
M0184 tgaTGACGTcA
Binding Sites: MA1348.1.1
MA1348.1.10
MA1348.1.11
MA1348.1.12
MA1348.1.13
MA1348.1.14
MA1348.1.15
MA1348.1.16
MA1348.1.17
MA1348.1.18
MA1348.1.19
MA1348.1.2 / MA1348.1.3
MA1348.1.20
MA1348.1.4
MA1348.1.5
MA1348.1.6
MA1348.1.7
MA1348.1.8
MA1348.1.9
Publications: Izawa T., Foster R., Chua N.-H. Plant bZIP protein DNA binding specificity.. J. Mol. Biol. 230:1131-1144 (1993). [Pubmed]
Related annotations: PaperBLAST

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.