Transcription Factor
Accessions: | Q9M118 (JASPAR 2024) |
Names: | Myb domain protein 55, Putative transcription factor, Q9M118_ARATH, T15B16.4, Uncharacterized protein At4g01680 |
Organisms: | Arabidopsis thaliana |
Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
Uniprot: | Q9M118 |
Length: | 336 |
Pfam Domains: | 14-61 Myb-like DNA-binding domain 17-76 Myb-like DNA-binding domain 67-110 Myb-like DNA-binding domain 70-116 Myb-like DNA-binding domain |
Sequence: (in bold interface residues) | 1 MGRHSCCYKQKLRKGLWSPEEDEKLLRYITKYGHGCWSSVPKQAGLQRCGKSCRLRWINY 60 61 LRPDLKRGAFSQDEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRLRG 120 121 IDPVTHKLLTEIETGTDDKTKPVEKSQQTYLVETDGSSSTTTCSTNQNNNTDHLYTGNFG 180 181 FQRLSLENGSRIAAGSDLGIWIPQTGRNHHHHVDETIPSAVVLPGSMFSSGLTGYRSSNL 240 241 GLIELENSFSTGPMMTEHQQIQESNYNNSTFFGNGNLNWGLTMEENQNPFTISNHSNSSL 300 301 YSDIKSETNFFGTEATNVGMWPCNQLQPQQHAYGHI |
Interface Residues: | 14, 49, 50, 51, 52, 54, 55, 58, 59, 60, 101, 102, 105, 106, 109, 110, 111 |
3D-footprint Homologues: | 3osg_A, 7c4r_A, 1vfc_A, 2kdz_A, 7xur_A, 1mse_C, 3zqc_A, 5eyb_B, 6kks_A |
Binding Motifs: | MA1041.1 ACCTAMCG |
Publications: | Zhong R, Ye ZH. MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genes. Plant Cell Physiol 53:368-80 (2012). [Pubmed] |
Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.