Transcription Factor

Accessions: Q9M118 (JASPAR 2024)
Names: Myb domain protein 55, Putative transcription factor, Q9M118_ARATH, T15B16.4, Uncharacterized protein At4g01680
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Uniprot: Q9M118
Length: 336
Pfam Domains: 14-61 Myb-like DNA-binding domain
17-76 Myb-like DNA-binding domain
67-110 Myb-like DNA-binding domain
70-116 Myb-like DNA-binding domain
Sequence:
(in bold interface residues)
1 MGRHSCCYKQKLRKGLWSPEEDEKLLRYITKYGHGCWSSVPKQAGLQRCGKSCRLRWINY 60
61 LRPDLKRGAFSQDEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRLRG 120
121 IDPVTHKLLTEIETGTDDKTKPVEKSQQTYLVETDGSSSTTTCSTNQNNNTDHLYTGNFG 180
181 FQRLSLENGSRIAAGSDLGIWIPQTGRNHHHHVDETIPSAVVLPGSMFSSGLTGYRSSNL 240
241 GLIELENSFSTGPMMTEHQQIQESNYNNSTFFGNGNLNWGLTMEENQNPFTISNHSNSSL 300
301 YSDIKSETNFFGTEATNVGMWPCNQLQPQQHAYGHI
Interface Residues: 14, 49, 50, 51, 52, 54, 55, 58, 59, 60, 101, 102, 105, 106, 109, 110, 111
3D-footprint Homologues: 3osg_A, 7c4r_A, 1vfc_A, 2kdz_A, 7xur_A, 1mse_C, 3zqc_A, 5eyb_B, 6kks_A
Binding Motifs: MA1041.1 ACCTAMCG
Publications: Zhong R, Ye ZH. MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genes. Plant Cell Physiol 53:368-80 (2012). [Pubmed]
Related annotations: PaperBLAST

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.