Transcription Factor

Accessions: T098580_1.02 (CISBP 1.02), Q9W4B3 (JASPAR 2024)
Names: T098580_1.02;, Vsx2, Ceh-10 homeodomain-containing homolog, Homeobox protein CHX10, IP01192p, IP09721p, Q9W4B3_DROME, Visual system homeobox 2, Visual system homeobox 2, isoform A
Organisms: Drosophila melanogaster
Libraries: CISBP 1.02 1, JASPAR 2024 2
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Uniprot: Q9W4B3
Notes: experiment type:PBM, family:Homeodomain
Length: 640
Pfam Domains: 231-287 Homeobox domain
550-567 OAR domain
Sequence:
(in bold interface residues)
1 MPQRSPFAIQELLGLAVAAATEAPTDLTTTAGATVAKERQTPTPPKTTNATMATAATSAA 60
61 TAATPTNAAEGNLTSVSEPQQQPQQQQQEQQHHQPHHHQYREHHQMTMAAASRMAYFNAH 120
121 AAVAAAFMPHQLAAAVHHHHQHQHQHHPHHHPHHPHGAVGGPPPPPPMQHHHPHHPHHPL 180
181 LHAQGFPQLKSFAAGAGTCLPGSLAPKDFGMESLNGFGVGPNSKKKKKKRRHSRTIFTSY 240
241 QLEKLEEAFKEAHYPDVYAREMLSLKTELPEDRIQVWFQNRRAKWRKTEKVWGGSTIMAE 300
301 YGLYGAMVRHSLPLPDTILKSAKDNDAVAPWLLGMHRKSIEAQSALKDDSGVSDHEDSAG 360
361 SKSAHSEDLSRSRCHALSSSTESLNVVSPAPSSCPTSASTSAPPTSTSGYAGAASSAATT 420
421 PTGASTTNSSSSPHIELGSPSPQQQQHLQLQQQQQQQASLYLGAGAVVTGCAPPSYHPLL 480
481 DAANAAGAGAAASSKDFHMIMNTAVAAAAAAAQQQHQQQQQQQQQATATAPGLHAHNLAA 540
541 ALMEHDPDAFRNNSIACLRAKAQEHQARLLNNGGLFLQVRRFAQGQAQIQDPSDMLKLSE 600
601 EHNNNSPIPIPPAHSTVNTQVNVKMELTANGGSMKNYEEA
Interface Residues: 226, 230, 231, 232, 233, 234, 272, 273, 275, 276, 279, 280, 283, 284, 287
3D-footprint Homologues: 3d1n_M, 4j19_B, 2h1k_B, 1ig7_A, 1puf_A, 6a8r_A, 3cmy_A, 5zfz_A, 1fjl_B, 2lkx_A, 1nk2_P, 1zq3_P, 6m3d_C, 2ld5_A, 3a01_E, 7psx_B, 5hod_A, 3lnq_A, 2hdd_A, 1jgg_B, 7q3o_C, 5jlw_D, 3rkq_B, 2r5y_A, 1puf_B, 6es3_K, 4xrs_G, 2hos_A, 1au7_A, 4cyc_A, 5flv_I, 3l1p_A, 1b72_A, 5zjt_E, 1e3o_C, 7xrc_C, 2xsd_C, 1du0_A, 4qtr_D, 1o4x_A, 8g87_X
Binding Motifs: MA0180.1 kTTAATTAG
M1103_1.02 cTAATTAA
Binding Sites: MA0180.1.1
MA0180.1.10
MA0180.1.11
MA0180.1.12 / MA0180.1.7
MA0180.1.13
MA0180.1.14
MA0180.1.15
MA0180.1.16
MA0180.1.17
MA0180.1.18
MA0180.1.19
MA0180.1.2
MA0180.1.20
MA0180.1.3
MA0180.1.4 / MA0180.1.5
MA0180.1.6
MA0180.1.8
MA0180.1.9
Publications: Noyes M.B, Christensen R.G, Wakabayashi A, Stormo G.D, Brodsky M.H, Wolfe S.A. Analysis of homeodomain specificities allows the family-wide prediction of preferred recognition sites. Cell 133:1277-89 (2008). [Pubmed]
Related annotations: PaperBLAST

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.