Transcription Factor
Accessions: | T098580_1.02 (CISBP 1.02), Q9W4B3 (JASPAR 2024) |
Names: | T098580_1.02;, Vsx2, Ceh-10 homeodomain-containing homolog, Homeobox protein CHX10, IP01192p, IP09721p, Q9W4B3_DROME, Visual system homeobox 2, Visual system homeobox 2, isoform A |
Organisms: | Drosophila melanogaster |
Libraries: | CISBP 1.02 1, JASPAR 2024 2 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
Uniprot: | Q9W4B3 |
Notes: | experiment type:PBM, family:Homeodomain |
Length: | 640 |
Pfam Domains: | 231-287 Homeobox domain 550-567 OAR domain |
Sequence: (in bold interface residues) | 1 MPQRSPFAIQELLGLAVAAATEAPTDLTTTAGATVAKERQTPTPPKTTNATMATAATSAA 60 61 TAATPTNAAEGNLTSVSEPQQQPQQQQQEQQHHQPHHHQYREHHQMTMAAASRMAYFNAH 120 121 AAVAAAFMPHQLAAAVHHHHQHQHQHHPHHHPHHPHGAVGGPPPPPPMQHHHPHHPHHPL 180 181 LHAQGFPQLKSFAAGAGTCLPGSLAPKDFGMESLNGFGVGPNSKKKKKKRRHSRTIFTSY 240 241 QLEKLEEAFKEAHYPDVYAREMLSLKTELPEDRIQVWFQNRRAKWRKTEKVWGGSTIMAE 300 301 YGLYGAMVRHSLPLPDTILKSAKDNDAVAPWLLGMHRKSIEAQSALKDDSGVSDHEDSAG 360 361 SKSAHSEDLSRSRCHALSSSTESLNVVSPAPSSCPTSASTSAPPTSTSGYAGAASSAATT 420 421 PTGASTTNSSSSPHIELGSPSPQQQQHLQLQQQQQQQASLYLGAGAVVTGCAPPSYHPLL 480 481 DAANAAGAGAAASSKDFHMIMNTAVAAAAAAAQQQHQQQQQQQQQATATAPGLHAHNLAA 540 541 ALMEHDPDAFRNNSIACLRAKAQEHQARLLNNGGLFLQVRRFAQGQAQIQDPSDMLKLSE 600 601 EHNNNSPIPIPPAHSTVNTQVNVKMELTANGGSMKNYEEA |
Interface Residues: | 226, 230, 231, 232, 233, 234, 272, 273, 275, 276, 279, 280, 283, 284, 287 |
3D-footprint Homologues: | 3d1n_M, 4j19_B, 2h1k_B, 1ig7_A, 1puf_A, 6a8r_A, 3cmy_A, 5zfz_A, 1fjl_B, 2lkx_A, 1nk2_P, 1zq3_P, 6m3d_C, 2ld5_A, 3a01_E, 7psx_B, 5hod_A, 3lnq_A, 2hdd_A, 1jgg_B, 7q3o_C, 5jlw_D, 3rkq_B, 2r5y_A, 1puf_B, 6es3_K, 4xrs_G, 2hos_A, 1au7_A, 4cyc_A, 5flv_I, 3l1p_A, 1b72_A, 5zjt_E, 1e3o_C, 7xrc_C, 2xsd_C, 1du0_A, 4qtr_D, 1o4x_A, 8g87_X |
Binding Motifs: | MA0180.1 kTTAATTAG M1103_1.02 cTAATTAA |
Binding Sites: | MA0180.1.1 MA0180.1.10 MA0180.1.11 MA0180.1.12 / MA0180.1.7 MA0180.1.13 MA0180.1.14 MA0180.1.15 MA0180.1.16 MA0180.1.17 MA0180.1.18 MA0180.1.19 MA0180.1.2 MA0180.1.20 MA0180.1.3 MA0180.1.4 / MA0180.1.5 MA0180.1.6 MA0180.1.8 MA0180.1.9 |
Publications: | Noyes M.B, Christensen R.G, Wakabayashi A, Stormo G.D, Brodsky M.H, Wolfe S.A. Analysis of homeodomain specificities allows the family-wide prediction of preferred recognition sites. Cell 133:1277-89 (2008). [Pubmed] |
Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.