Transcription Factor

						

			
Accessions: CDC5 (Athamap 20091028)

			
Names: CDC5
Organisms: Arabidopsis thaliana
Libraries: Athamap 20091028 1
1 Bulow L, Engelmann S, Schindler M, Hehl R. AthaMap, integrating transcriptional and post-transcriptional data. Nucleic acids research 37:D983-6 (2009).  [Pubmed]
Length: 844
Pfam Domains:      8-53 Myb-like DNA-binding domain
    10-70 Myb-like DNA-binding domain
   60-103 Myb-like DNA-binding domain
   62-107 Myb-like DNA-binding domain
  338-729 pre-mRNA splicing factor component
Sequence: 
(in bold interface residues)		   1 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKT   60
  61 EWTREEDEKLLHLAKLLPTQWRTIAPIVGRTPSQCLERYEKLLDAACTKDENYDAADDPR  120
 121 KLRPGEIDPNPEAKPARPDPVDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARR  180
 181 LASLQKRRELKAAGIDGRHRKRKRKGIDYNAEIPFEKRAPAGFYDTADEDRPADQVKFPT  240
 241 TIEELEGKRRADVEAHLRKQDVARNKIAQRQDAPAAILQANKLNDPEVVRKRSKLMLPPP  300
 301 QISDHELEEIAKMGYASDLLAENEELTEGSAATRALLANYSQTPRQGMTPMRTPQRTPAG  360
 361 KGDAIMMEAENLARLRDSQTPLLGGENPELHPSDFTGVTPRKKEIQTPNPMLTPSMTPGG  420
 421 AGLTPRIGLTPSRDGSSFSMTPKGTPFRDELHINEDMDMQQSAKLERQRREEARRSLRSG  480
 481 LTGLPQPKNEYQIVAQPPPEESEEPEEKIEEDMSDRIAREKAEEEARQQALLKKRSKVLQ  540
 541 RDLPRPPAASLAVIRNSLLSADGDKSSVVPPTPIEVADKMVREELLQLLEHDNAKYPLDD  600
 601 KAEKKKGAKNRTNRSASQVLAIDDFDENELQEADKMIKEEGKFLCVSMGHENKTLDDFVE  660
 661 AHNTCVNDLMYFPTRSAYELSSVAGNADKVAAFQEEMENVRKKMEEDEKKAEHMKAKYKT  720
 721 YTKGHERRAETVWTQIEATLKQAEIGGTEVECFKALKRQEEMAASFRKKNLQEEVIKQKE  780
 781 TESKLQTRYGNMLAMVEKAEEIMVGFRAQALKKQEDVEDSHKLKEAKLATGEEEDIAIAM  840
 841 EASA
Interface Residues: 7, 41, 42, 43, 44, 46, 47, 50, 51, 52, 92, 93, 96, 97, 100, 101, 102
3D-footprint Homologues: 1w0t_A, 2kdz_A, 1vfc_A, 3zqc_A, 6kks_A, 1mse_C, 3osg_A, 7c4r_A, 7xur_A, 5eyb_B
Binding Motifs: CDC5 rsCTCAGCGsg
			
Publications: Hirayama T., Shinozaki K. A cdc5+ homolog of a higher plant, Arabidopsis thaliana. Proc. Natl. Acad. Sci. USA 93:13371-13376 (1996). [Pubmed]
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.