Transcription Factor
| Accessions: | Opa (SMILE-seq 1.0) |
| Names: | Male-specific opa-containing protein, Opa, OPAP_DROME, Protein dromsopa |
| Organisms: | Drosophila melanogaster |
| Libraries: | SMILE-seq 1.0 1 1 Isakova A, Groux R, Imbeault M, Rainer P, Alpern D, Dainese R, Ambrosini G, Trono D, Bucher P, Deplancke B. SMiLE-seq identifies binding motifs of single and dimeric transcription factors. Nat Methods 14:316-322 (2017). [Pubmed] |
| Uniprot: | P23488 |
| Length: | 608 |
| Pfam Domains: | 278-303 Zinc-finger double domain 291-315 C2H2-type zinc finger 291-315 Zinc finger, C2H2 type 307-334 Zinc-finger double domain 321-345 C2H2-type zinc finger 339-364 Zinc-finger double domain 351-375 C2H2-type zinc finger 351-375 Zinc finger, C2H2 type |
| Sequence: (in bold interface residues) | 1 MMMNAFIEPAQHHLASYGLRMSPNTTASNSNAQQQQQQQLEMTQQQQQQQQQQQQQQQQD 60 61 QESAAATAAAYQNSGYGHFNSYASRDFLLGRREAEYGVAGSAGQASAAADSMLFSGFPAQ 120 121 AAELGSGFGQHPFHSHHHHHQMRMGMADAYAAGHPYNHHGNFPTAAVHHPVVHHPSHHAM 180 181 SAMHPAGAGAFLRYMRHQPASSASSVKQEMQCLWIDPDQPGLVPPGGRKTCNKVFHSMHE 240 241 IVTHLTVEHVGGPECTTHACFWVGCSRNGRPFKAKYKLVNHIRVHTGEKPFACPHPGCGK 300 301 VFARSENLKIHKRTHTGEKPFKCEHEGCDRRFANSSDRKKHSHVHTSDKPYNCRINGCDK 360 361 SYTHPSSLRKHMKVHGNVDEKSPSHGYDSEGEESSSSSIITGGAQTPPSTRLDGSAGSSS 420 421 GVSSLSGGSGIKSSPHSIKSEPNPMHSVHLGASSSGSSSTASSSASHLLQHQQHQHQQQQ 480 481 QQQQHQQQAQQQQQLTAHPSDPKSSPALQLMAASASAYLPPPLGPPPSHHHHPHHHQAAP 540 541 SPGAAAASASMLHHNHHLLYHPAAQHHPPSDWYHTTAPSGSAEAMNSLNHFGHHHHHHHL 600 601 MHPGAATA |
| Interface Residues: | 56, 76, 78, 84, 94, 273, 274, 276, 277, 279, 280, 282, 283, 284, 286, 303, 304, 305, 306, 307, 309, 310, 311, 333, 334, 335, 336, 337, 338, 339, 340, 341, 344, 363, 364, 365, 366, 367, 369, 370 |
| 3D-footprint Homologues: | 6gcf_B, 7w1m_H, 5v3j_F, 8cuc_F, 1tf3_A, 1g2f_F, 1tf6_A, 5ei9_F, 5k5i_A, 2gli_A, 6ml4_A, 2i13_A, 8gn3_A, 6e94_A, 7ysf_A, 2lt7_A, 7n5w_A, 8h9h_G, 5und_A, 7eyi_G, 5kkq_D, 2jpa_A, 3uk3_C, 6jnm_A, 7y3l_A, 4x9j_A, 5kl3_A, 6u9q_A, 1llm_D, 7txc_E, 1ubd_C, 2kmk_A, 8ssq_A, 1mey_C, 6blw_A, 5yel_A, 4m9v_C, 7y3m_I, 6wmi_A, 6a57_A, 2wbs_A, 5yj3_D, 1f2i_J |
| Binding Motifs: | Opa cdCmrCGGGGGGy |
| Publications: | Isakova A, Groux R, Imbeault M, Rainer P, Alpern D, Dainese R, Ambrosini G, Trono D, Bucher P, Deplancke B. SMiLE-seq identifies binding motifs of single and dimeric transcription factors. Nat Methods 14:316-322 (2017). [Pubmed] |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.