Transcription Factor
| Accessions: | DDF1 (ArabidopsisPBM 20140210), UP00555A (UniPROBE 20160601), T00104 (AthalianaCistrome v4_May2016), Q9LN86 (JASPAR 2024) |
| Names: | DDF1, DREB1F, DWARF AND DELAYED FLOWERING1, AT1G12610, T00104;, Dehydration-responsive element-binding protein 1F, DRE1F_ARATH, Protein DREB1F |
| Organisms: | Arabidopsis thaliana, Arabidopsis lyrata |
| Libraries: | ArabidopsisPBM 20140210 1, UniPROBE 20160601 2, AthalianaCistrome v4_May2016 3, JASPAR 2024 4 1 Franco-Zorrilla J.M, López-Vidriero I, Carrasco J.L, Godoy M, Vera P, Solano R. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proceedings of the National Academy of Sciences of the United States of America : (2014). [Pubmed] 2 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] 3 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] 4 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Description: | DWARF AND DELAYED FLOWERING1: Orthologous to Arabidopsis thaliana DDF1 |
| Notes: | AP2/EREBP (DREB), ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:AP2-EREBP |
| Length: | 209 |
| Pfam Domains: | 28-78 AP2 domain |
| Sequence: (in bold interface residues) | 1 MNNDDIILAEMRPKKRAGRRVFKETRHPVYRGIRRRNGDKWVCEVREPTHQRRIWLGTYP 60 61 TADMAARAHDVAVLALRGRSACLNFADSAWRLPVPESNDPDVIRRVAAEAAEMFRPVDLE 120 121 SGITVLPCAGDDVDLGFGSGSGSGSGSEERNSSSYGFGDYEEVSTTMMRLAEGPLMSPPR 180 181 SYMEDMTPTNVYTEEEMCYEDMSLWSYRY |
| Interface Residues: | 16, 34, 36, 37, 38, 44, 46, 50, 52, 53, 55, 115 |
| 3D-footprint Homologues: | 5wx9_A, 1gcc_A, 7wq5_A, 7et4_D, 4zcf_B |
| Binding Motifs: | DDF1 sATGTCGGCv UP00555A_1 kkkrvtsATGTCGGCrrsgrtw UP00555A_2 kksavwgATGTCGGCrrkgakw UP00555A_3 kskrsysATGTCGGCrrsgkwg UP00555A_4 kkkrvysATGTCGRCgvkgsbh UP00555A_5 dkyrmwrATGTCGRCrvkgvty UP00555A_6 bgksgysATGTCGrCgmdgssr M0083 hgATGTCGRCrrmrr M0134 yckyyryCGACAy MA1748.1 yrCCGACat MA1748.2 rCCGAC |
| Binding Sites: | CGGCCGAC AAGTCGGC AATGTCGG ACCGACAT AGCCGACA AGGTCGGC ATGTCGAC ATGTCGGC CATGTCGG CCGACATA CCGACATC CGCCGACA CTGCCGAC GCCGACAA GCCGACAC GGCCGACA GTCGGCAA TACCGACA TGCCGACA TGTCGACA |
| Publications: | Lehti-Shiu MD, Uygun S, Moghe GD, Panchy N, Fang L, Hufnagel DE, Jasicki HL, Feig M, Shiu SH. Molecular Evidence for Functional Divergence and Decay of a Transcription Factor Derived from Whole-Genome Duplication in Arabidopsis thaliana. Plant Physiol 168:1717-34 (2015). [Pubmed] Magome H, Yamaguchi S, Hanada A, Kamiya Y, Oda K. The DDF1 transcriptional activator upregulates expression of a gibberellin-deactivating gene, GA2ox7, under high-salinity stress in Arabidopsis. Plant J 56:613-26 (2008). [Pubmed] |
| Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.