Transcription Factor
Accessions: | Q12457 (JASPAR 2024) |
Names: | NSI1_YEAST, NTS1 silencing protein 1, RNA polymerase I termination factor |
Organisms: | Saccharomyces cerevisiae S288c, Saccharomyces cerevisiae |
Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
Length: | 570 |
Pfam Domains: | 345-389 Myb-like DNA-binding domain 348-408 Myb-like DNA-binding domain 398-485 Myb-like DNA-binding domain |
Sequence: (in bold interface residues) | 1 MDSVSNLKSTNFQNNNDPKESVEEAVLRYVGVDLKNHIKKTKKKLKKQKKRKHGSKMSHE 60 61 DEDTDMDWYLKTSGSKDLRKVDDIEPNSVAVAAVAAAYNSSMREKDKRSCHKKSSNSRSE 120 121 RKKHRKRKSSKERKAKIKMVLDPQLTTLDDGITTTAFLPDDLIAETAFDKYVDTEKAYLA 180 181 KHPSKSLEVNEDDKENNFNNNSSTLVRIYTDLEGIPNDGSYIKRTPKIPEKDVKSDDLIL 240 241 APEENNGDTALLRSDIVKASVIDGAITKSIGKKFTPSEENALDQFIEEYMKIRGLDRRQM 300 301 CERIWSTDGVIRDGFWANISKVLPYRTRSSIYKHIRRKYHIFEQRGKWTPEEDQELARLC 360 361 LEKEGHWTEVGKLLGRMPEDCRDRWRNYMKCGSKRGSKRWSKEEEELLTTVVNEMIEEAH 420 421 QYQRMKALEAANKNDRYNQMYSRGPKGKRISDNPTFKDMINWTVVSERMSGTRSRIQCRY 480 481 KWNKLVTDEAARSMLSIPVSERKWLLERLKQLPKTSYSNIDWNSIATYKPGYPRTGLELR 540 541 LCYEQMREKIHDFKGRSTAEIIDSLLEQIN |
Interface Residues: | 328, 329, 332, 333, 336, 337, 377, 378, 379, 380, 382, 383, 386, 387, 388, 475, 476, 479, 480 |
3D-footprint Homologues: | 3zqc_A, 5eyb_B, 2kdz_A, 6kks_A, 3osg_A, 1mse_C |
Binding Motifs: | MA0421.1 TTTACCCGGm |
Publications: | Pachkov M, Erb I, Molina N, van Nimwegen E. SwissRegulon: a database of genome-wide annotations of regulatory sites. Nucleic acids research 35:D127-31 (2007). [Pubmed] |
Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.