Transcription Factor
Accessions: | Q9JKU8 (JASPAR 2024) |
Names: | LIM homeobox transcription factor 1-alpha, LIM/homeobox protein 1.1, LIM/homeobox protein LMX1A, LMX-1.1, LMX1A_MOUSE |
Organisms: | Mus musculus |
Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
Length: | 382 |
Pfam Domains: | 35-90 LIM domain 94-151 LIM domain 196-252 Homeobox domain 220-248 Homeobox KN domain |
Sequence: (in bold interface residues) | 1 MLDGLKMEENFQSAIETSASFSSLLGRAVSPKSVCEGCQRVISDRFLLRLNDSFWHEQCV 60 61 QCASCKEPLETTCFYRDKKLYCKYHYEKLFAVKCGGCFEAIAPNEFVMRAQKSVYHLSCF 120 121 CCCVCERQLQKGDEFVLKEGQLLCKGDYEKERELLSLVSPAASDSGKSDDEESLCKSAHG 180 181 AGKGASEDGKDHKRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQ 240 241 VWFQNQRAKMKKLARRQQQQQQDQQNTQRLTSAQTNGSGNAGMEGIMNPYTTLPTPQQLL 300 301 AIEQSVYNSDPFRQGLTPPQMPGDHMHPYGAEPLFHDLDSDDTSLSNLGDCFLATSEAGP 360 361 LQSRVGNPIDHLYSMQNSYFTS |
Interface Residues: | 195, 196, 197, 198, 199, 237, 238, 240, 241, 244, 245, 248, 249, 252, 262, 265, 297 |
3D-footprint Homologues: | 3d1n_M, 3cmy_A, 1ig7_A, 2h1k_B, 5zfz_A, 1nk2_P, 1fjl_B, 6a8r_A, 1puf_A, 1jgg_B, 2lkx_A, 1zq3_P, 6m3d_C, 3lnq_A, 2ld5_A, 2d5v_B, 7psx_B, 5jlw_D, 3rkq_B, 4xrs_G, 7q3o_C, 4cyc_A, 6es3_K, 5flv_I, 3l1p_A, 2hdd_A, 1au7_A, 2r5y_A, 5hod_A, 2hos_A, 1b72_A, 1e3o_C, 7xrc_C, 1du0_A, 1puf_B, 5zjt_E, 4qtr_D, 1o4x_A, 8g87_X, 4xrm_B, 6eko_A |
Binding Motifs: | PH0100.1 sgawTTAATTAAwwwyy |
Publications: | Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed] |
Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.