Transcription Factor

Accessions: Q9JKU8 (JASPAR 2024)
Names: LIM homeobox transcription factor 1-alpha, LIM/homeobox protein 1.1, LIM/homeobox protein LMX1A, LMX-1.1, LMX1A_MOUSE
Organisms: Mus musculus
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Length: 382
Pfam Domains: 35-90 LIM domain
94-151 LIM domain
196-252 Homeobox domain
220-248 Homeobox KN domain
Sequence:
(in bold interface residues)
1 MLDGLKMEENFQSAIETSASFSSLLGRAVSPKSVCEGCQRVISDRFLLRLNDSFWHEQCV 60
61 QCASCKEPLETTCFYRDKKLYCKYHYEKLFAVKCGGCFEAIAPNEFVMRAQKSVYHLSCF 120
121 CCCVCERQLQKGDEFVLKEGQLLCKGDYEKERELLSLVSPAASDSGKSDDEESLCKSAHG 180
181 AGKGASEDGKDHKRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQ 240
241 VWFQNQRAKMKKLARRQQQQQQDQQNTQRLTSAQTNGSGNAGMEGIMNPYTTLPTPQQLL 300
301 AIEQSVYNSDPFRQGLTPPQMPGDHMHPYGAEPLFHDLDSDDTSLSNLGDCFLATSEAGP 360
361 LQSRVGNPIDHLYSMQNSYFTS
Interface Residues: 195, 196, 197, 198, 199, 237, 238, 240, 241, 244, 245, 248, 249, 252, 262, 265, 297
3D-footprint Homologues: 3d1n_M, 3cmy_A, 1ig7_A, 2h1k_B, 5zfz_A, 1nk2_P, 1fjl_B, 6a8r_A, 1puf_A, 1jgg_B, 2lkx_A, 1zq3_P, 6m3d_C, 3lnq_A, 2ld5_A, 2d5v_B, 7psx_B, 5jlw_D, 3rkq_B, 4xrs_G, 7q3o_C, 4cyc_A, 6es3_K, 5flv_I, 3l1p_A, 2hdd_A, 1au7_A, 2r5y_A, 5hod_A, 2hos_A, 1b72_A, 1e3o_C, 7xrc_C, 1du0_A, 1puf_B, 5zjt_E, 4qtr_D, 1o4x_A, 8g87_X, 4xrm_B, 6eko_A
Binding Motifs: PH0100.1 sgawTTAATTAAwwwyy
Publications: Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed]
Related annotations: PaperBLAST

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