Transcription Factor
| Accessions: | Q9SCP1 (JASPAR 2024), T14508 (AthalianaCistrome v4_May2016) |
| Names: | AtMYB27, Myb-related protein 27, MYB27_ARATH, Transcription factor MYB27, AT3G53200, MYB27, T14508; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1, AthalianaCistrome v4_May2016 2 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:MYB |
| Length: | 238 |
| Pfam Domains: | 11-58 Myb-like DNA-binding domain 14-72 Myb-like DNA-binding domain 64-108 Myb-like DNA-binding domain 68-114 Myb-like DNA-binding domain |
| Sequence: (in bold interface residues) | 1 MDFKKEETLRRGPWLEEEDERLVKVISLLGERRWDSLAIVSGLKRSGKSCRLRWMNYLNP 60 61 TLKRGPMSQEEERIIFQLHALWGNKWSKIARRLPGRTDNEIKNYWRTHYRKKQEAQNYGK 120 121 LFEWRGNTGEELLHKYKETEITRTKTTSQEHGFVEVVSMESGKEANGGVGGRESFGVMKS 180 181 PYENRISDWISEISTDQSEANLSEDHSSNSCSENNINIGTWWFQETRDFEEFSCSLWS |
| Interface Residues: | 46, 47, 48, 49, 51, 52, 56, 57, 98, 99, 102, 103, 106, 107, 108 |
| 3D-footprint Homologues: | 2kdz_A, 7xur_A, 3osg_A, 3zqc_A, 1mse_C, 6kks_A |
| Binding Motifs: | M0530 / MA1292.1 aaaAARTTAGGTAwa M0521 tytTACCTAAyTTttt MA1292.2 aaAARTTAGGTA |
| Binding Sites: | MA1292.1.1 MA1292.1.10 MA1292.1.11 MA1292.1.12 MA1292.1.13 MA1292.1.14 MA1292.1.15 MA1292.1.16 MA1292.1.17 MA1292.1.18 MA1292.1.19 MA1292.1.2 MA1292.1.20 MA1292.1.3 MA1292.1.4 MA1292.1.5 MA1292.1.6 MA1292.1.7 MA1292.1.8 MA1292.1.9 MA1292.2.1 MA1292.2.10 MA1292.2.11 MA1292.2.12 MA1292.2.13 MA1292.2.14 MA1292.2.15 MA1292.2.16 MA1292.2.17 MA1292.2.18 MA1292.2.19 MA1292.2.2 MA1292.2.20 MA1292.2.3 MA1292.2.4 MA1292.2.5 MA1292.2.6 MA1292.2.7 MA1292.2.8 MA1292.2.9 |
| Publications: | Zhong R, Ye ZH. MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genes. Plant Cell Physiol 53:368-80 (2012). [Pubmed] |
| Related annotations: | PaperBLAST |
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