Transcription Factor
| Accessions: | F4JRB0 (JASPAR 2024), T17097 (AthalianaCistrome v4_May2016) |
| Names: | HHO5_ARATH, MYB-domain transcription factor HHO5, Protein HRS1 HOMOLOG 5, Protein ULT1 INTERACTING FACTOR 1, Transcription factor HHO5, AT4G37180, T17097; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1, AthalianaCistrome v4_May2016 2 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:G2-like |
| Length: | 363 |
| Pfam Domains: | 219-270 Myb-like DNA-binding domain |
| Sequence: (in bold interface residues) | 1 MVQTETDQRMGLNLNLSIYSLPKPLSQFLDEVSRIKDNHSKLSEIDGYVGKLEEERNKID 60 61 VFKRELPLCMLLLNEEIVFLCVAIGALKDEARKGLSLMASNGKFDDVERAKPETDKKSWM 120 121 SSAQLWISNPNSQFRSTNEEEEDRCVSQNPFQTCNYPNQGGVFMPFNRPPPPPPPAPLSL 180 181 MTPTSEMMMDYSRIEQSHHHHQFNKPSSQSHHIQKKEQRRRWSQELHRKFVDALHRLGGP 240 241 QVATPKQIRDLMKVDGLTNDEVKSHLQKYRMHIRKHPLHPTKTLSSSDQPGVLERESQSL 300 301 ISLSRSDSPQSPLVARGLFSSNVGHSSEEDEEEEDEEEEKSDGRSSCRNDETKKKRQVLD 360 361 LEL |
| Interface Residues: | 219, 259, 260, 263, 264, 267, 268 |
| 3D-footprint Homologues: | 6qec_A, 7d3t_D, 6j5b_C |
| Binding Motifs: | M0380 / MA1164.1 harAAGATTCy MA1413.1 aaAGATTCyr M0391 mwrAAGATTCy MA1164.2 rAAGATTC |
| Binding Sites: | MA1164.2.7 MA1164.2.8 MA1164.2.10 MA1164.1.1 MA1164.1.10 MA1164.1.11 MA1164.1.12 MA1164.1.13 MA1164.1.14 MA1164.1.15 MA1164.1.16 MA1164.1.17 MA1164.1.18 MA1164.1.19 MA1164.1.2 MA1164.1.20 MA1164.1.3 MA1164.1.4 MA1164.1.5 MA1164.1.6 MA1164.1.7 MA1164.1.8 MA1164.1.9 MA1164.2.1 MA1164.2.11 MA1164.2.12 MA1164.2.13 MA1164.2.14 MA1164.2.15 MA1164.2.16 MA1164.2.17 MA1164.2.18 MA1164.2.19 MA1164.2.2 MA1164.2.20 MA1164.2.3 MA1164.2.4 MA1164.2.5 MA1164.2.6 MA1164.2.9 |
| Publications: | Hosoda K., Imamura A., Katoh E., Hatta T., Tachiki M., Yamada H., Mizuno T., Yamazaki T. Molecular structure of the GARP family of plant Myb-related DNA binding motifs of the Arabidopsis response regulators.. Plant Cell 14:2015-2029 (2002). [Pubmed] Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Related annotations: | PaperBLAST |
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