Transcription Factor

Accessions: T151053_1.02 (CISBP 1.02), Q9LSD5 (JASPAR 2024), T13995 (AthalianaCistrome v4_May2016)
Names: T151053_1.02;, TCP20, TCP20_ARATH, AT3G27010, T13995;
Organisms: Arabidopsis thaliana
Libraries: CISBP 1.02 1, JASPAR 2024 2, AthalianaCistrome v4_May2016 3
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
3 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Notes: experiment type:PBM, family:TCP, ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq
Length: 314
Pfam Domains: 73-154 TCP family transcription factor
Sequence:
(in bold interface residues)
1 MDPKNLNRHQVPNFLNPPPPPRNQGLVDDDAASAVVSDENRKPTTEIKDFQIVVSASDKE 60
61 PNKKSQNQNQLGPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQW 120
121 LLQQAEPSIIAATGSGTIPASALASSAATSNHHQGGSLTAGLMISHDLDGGSSSSGRPLN 180
181 WGIGGGEGVSRSSLPTGLWPNVAGFGSGVPTTGLMSEGAGYRIGFPGFDFPGVGHMSFAS 240
241 ILGGNHNQMPGLELGLSQEGNVGVLNPQSFTQIYQQMGQAQAQAQGRVLHHMHHNHEEHQ 300
301 QESGEKDDSQGSGR
Interface Residues: 80, 81, 82, 91, 93
3D-footprint Homologues: 7vp3_D, 7vp2_B
Binding Motifs: M1647_1.02 GGsCCCACma
MA1065.1 GGsCCCACma
M0752 waaadarmwdGTGGGrCCCAC
M0759 gTGGGkCCCACm
MA1065.2 wwwwGTGGGwCCCACwwww
MA1065.3 GTGGGwCCCAC
Binding Sites: MA1065.1.1
MA1065.1.10 / MA1065.1.12 / MA1065.1.15 / MA1065.1.16 / MA1065.1.5 / MA1065.1.7
MA1065.1.11
MA1065.1.13 / MA1065.1.14 / MA1065.1.17 / MA1065.1.18 / MA1065.1.19 / MA1065.1.6 / MA1065.1.8
MA1065.1.2
MA1065.1.20
MA1065.1.3 / MA1065.1.4
MA1065.1.9
MA1065.2.1
MA1065.2.10 / MA1065.2.12
MA1065.2.11 / MA1065.2.13
MA1065.2.12 / MA1065.2.14
MA1065.2.13 / MA1065.2.17
MA1065.2.18
MA1065.2.14 / MA1065.2.19
MA1065.2.15 / MA1065.2.20
MA1065.2.2
MA1065.2.3 / MA1065.2.5
MA1065.2.4 / MA1065.2.6
MA1065.2.5 / MA1065.2.7
MA1065.2.6 / MA1065.2.8
MA1065.2.11 / MA1065.2.9
MA1065.2.10 / MA1065.2.8
MA1065.2.15
MA1065.2.16
MA1065.2.3
MA1065.2.4
MA1065.2.7 / MA1065.2.9
MA1065.2.16
MA1065.2.20
MA1065.2.17
MA1065.2.18
MA1065.2.19
MA1065.3.11
MA1065.3.12
MA1065.3.14 / MA1065.3.4
MA1065.3.15 / MA1065.3.3
MA1065.3.16
MA1065.3.20
MA1065.3.1
MA1065.3.2
MA1065.3.5
MA1065.3.6
MA1065.3.9
MA1065.3.10
MA1065.3.13
MA1065.3.17 / MA1065.3.18
MA1065.3.19
MA1065.3.7
MA1065.3.8
Publications: Viola I. L., Uberti Manassero N. G., Ripoll R., Gonzalez D. H. The Arabidopsis class I TCP transcription factor AtTCP11 is a developmental regulator with distinct DNA binding properties due to the presence of threonine at position 15 of the TCP domain.. Biochem. J. 435:143 (2011). [Pubmed]

Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Related annotations: PaperBLAST

Disclaimer and license

These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.