Transcription Factor
Accessions: | T151053_1.02 (CISBP 1.02), Q9LSD5 (JASPAR 2024), T13995 (AthalianaCistrome v4_May2016) |
Names: | T151053_1.02;, TCP20, TCP20_ARATH, AT3G27010, T13995; |
Organisms: | Arabidopsis thaliana |
Libraries: | CISBP 1.02 1, JASPAR 2024 2, AthalianaCistrome v4_May2016 3 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 3 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
Notes: | experiment type:PBM, family:TCP, ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq |
Length: | 314 |
Pfam Domains: | 73-154 TCP family transcription factor |
Sequence: (in bold interface residues) | 1 MDPKNLNRHQVPNFLNPPPPPRNQGLVDDDAASAVVSDENRKPTTEIKDFQIVVSASDKE 60 61 PNKKSQNQNQLGPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQW 120 121 LLQQAEPSIIAATGSGTIPASALASSAATSNHHQGGSLTAGLMISHDLDGGSSSSGRPLN 180 181 WGIGGGEGVSRSSLPTGLWPNVAGFGSGVPTTGLMSEGAGYRIGFPGFDFPGVGHMSFAS 240 241 ILGGNHNQMPGLELGLSQEGNVGVLNPQSFTQIYQQMGQAQAQAQGRVLHHMHHNHEEHQ 300 301 QESGEKDDSQGSGR |
Interface Residues: | 80, 81, 82, 91, 93 |
3D-footprint Homologues: | 7vp3_D, 7vp2_B |
Binding Motifs: | M1647_1.02 GGsCCCACma MA1065.1 GGsCCCACma M0752 waaadarmwdGTGGGrCCCAC M0759 gTGGGkCCCACm MA1065.2 wwwwGTGGGwCCCACwwww MA1065.3 GTGGGwCCCAC |
Binding Sites: | MA1065.1.1 MA1065.1.10 / MA1065.1.12 / MA1065.1.15 / MA1065.1.16 / MA1065.1.5 / MA1065.1.7 MA1065.1.11 MA1065.1.13 / MA1065.1.14 / MA1065.1.17 / MA1065.1.18 / MA1065.1.19 / MA1065.1.6 / MA1065.1.8 MA1065.1.2 MA1065.1.20 MA1065.1.3 / MA1065.1.4 MA1065.1.9 MA1065.2.1 MA1065.2.10 / MA1065.2.12 MA1065.2.11 / MA1065.2.13 MA1065.2.12 / MA1065.2.14 MA1065.2.13 / MA1065.2.17 MA1065.2.18 MA1065.2.14 / MA1065.2.19 MA1065.2.15 / MA1065.2.20 MA1065.2.2 MA1065.2.3 / MA1065.2.5 MA1065.2.4 / MA1065.2.6 MA1065.2.5 / MA1065.2.7 MA1065.2.6 / MA1065.2.8 MA1065.2.11 / MA1065.2.9 MA1065.2.10 / MA1065.2.8 MA1065.2.15 MA1065.2.16 MA1065.2.3 MA1065.2.4 MA1065.2.7 / MA1065.2.9 MA1065.2.16 MA1065.2.20 MA1065.2.17 MA1065.2.18 MA1065.2.19 MA1065.3.11 MA1065.3.12 MA1065.3.14 / MA1065.3.4 MA1065.3.15 / MA1065.3.3 MA1065.3.16 MA1065.3.20 MA1065.3.1 MA1065.3.2 MA1065.3.5 MA1065.3.6 MA1065.3.9 MA1065.3.10 MA1065.3.13 MA1065.3.17 / MA1065.3.18 MA1065.3.19 MA1065.3.7 MA1065.3.8 |
Publications: | Viola I. L., Uberti Manassero N. G., Ripoll R., Gonzalez D. H. The Arabidopsis class I TCP transcription factor AtTCP11 is a developmental regulator with distinct DNA binding properties due to the presence of threonine at position 15 of the TCP domain.. Biochem. J. 435:143 (2011). [Pubmed] Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
Related annotations: | PaperBLAST |
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