Transcription Factor

						

			
Accessions: sna (FlyZincFinger 1.0 )

			
Names: CG3956
Organisms: Drosophila melanogaster
Libraries: FlyZincFinger 1.0  1
1 Enuameh MS et al (2013) Global analysis of Drosophila Cys2-His2 zinc finger proteins reveals a multitude of novel recognition motifs and binding determinants. Genome Res. 23(6):928-40. doi: 10.1101/gr.151472.112 [Pubmed]
Notes: family:Cys2His2 zinc finger
Length: 148
Pfam Domains:      5-25 C2H2-type zinc finger
     5-27 Zinc finger, C2H2 type
     5-29 C2H2-type zinc finger
    39-62 C2H2-type zinc finger
    40-62 C2H2-type zinc finger
    40-62 Zinc finger, C2H2 type
    54-77 Zinc-finger double domain
    67-88 C2H2-type zinc finger
    67-88 Zinc finger, C2H2 type
    67-88 C2H2-type zinc finger
   81-104 Zinc-finger double domain
   94-116 C2H2-type zinc finger
   94-116 C2H2-type zinc finger
   94-116 Zinc finger, C2H2 type
  108-133 Zinc-finger double domain
  122-145 C2H2-type zinc finger
  122-140 C2H2-type zinc finger
  122-145 Zinc finger, C2H2 type
Sequence: 
(in bold interface residues)		   1 KNYRFKCDECQKMYSTSMGLSKHRQFHCPAAECNQEKKTHSCEECGKLYTTIGALKMHIR   60
  61 THTLPCKCPICGKAFSRPWLLQGHIRTHTGEKPFQCPDCPRSFADRSNLRAHQQTHVDVK  120
 121 KYACQVCHKSFSRMSLLNKHSSSNCTIT
Interface Residues: 15, 16, 18, 19, 22, 37, 39, 40, 50, 51, 52, 53, 54, 56, 57, 59, 60, 63, 76, 77, 78, 79, 80, 82, 83, 84, 104, 105, 106, 107, 108, 109, 110, 111, 112, 115, 132, 133, 134, 135, 136, 137, 138, 139
3D-footprint Homologues: 7w1m_H, 5v3j_F, 2i13_A, 5yel_A, 1ubd_C, 6jnm_A, 8ssq_A, 8ssu_A, 6ml4_A, 5kkq_D, 5ei9_F, 7eyi_G, 7ysf_A, 6wmi_A, 6a57_A, 2jpa_A, 1tf3_A, 8cuc_F, 7y3l_A, 7n5w_A, 3uk3_C, 1f2i_J, 5k5i_A, 2kmk_A, 5und_A, 2gli_A, 1g2f_F, 1tf6_A, 4x9j_A, 8gn3_A, 1llm_D, 6blw_A, 2wbs_A, 6u9q_A, 1mey_C, 5kl3_A, 4m9v_C, 8h9h_G, 2lt7_A, 7y3m_I, 6e94_A, 2drp_D, 5yj3_D, 5k5l_F, 7txc_E
Binding Motifs: sna_FlyReg_FBgn0003448 smACyTGytd
sna_SANGER_10_FBgn0003448 cCACCTGTym
sna_SOLEXA_5_FBgn0003448 gkkgkrACAGGTGg
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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