Transcription Factor

Accessions: T100366_1.02 (CISBP 1.02)
Names: HD2, T100366_1.02;
Organisms: Pleurotus djamor
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:PBM, family:Homeodomain
Length: 550
Pfam Domains: 147-200 Homeobox domain
165-197 Homeobox KN domain
Sequence:
(in bold interface residues)
1 MTDTPTRFENALHRIINVSESLRSKTKLDPQTSNTGCRSPISSQPLSIDFPPPPNILPSL 60
61 RSKGVSEQAAKKLTDIFNSKCHILQSLLRNKLHDIQSHSSLPIHHLLSSYAQKTYQEDIL 120
121 RFEDELHRVAALHLDKLQADQVKPAAKTSFNADFVPFLEKYFEFNAYPSAADRSLMARKS 180
181 MMTPRQIEVWFQNHRNRARKEGKCLPRLRLAEELPKDLCLETLEERMSGYIASETDKFSS 240
241 DGSEVENNDSLNQGDELAIASEKKSLSANLLEPPYTIPPPYVTPRTSFLHASVPECISVL 300
301 SGAPLPWPRSPSISPTSPSKLRPLTQSQLDEFSDLFARLTVRDRSKKAVRGRATPLPLNH 360
361 RHISDCAATCATTTVLCRGRHPSFVSTPNTPSSSLFAPLPLRERSSPDMEVRSPSVGPLD 420
421 TASPSSKRRKSPQLPRRVPGSSPSSHIRVQHMHHPYASPSRASSSSSSCRTPSSSSESLS 480
481 TPRTPDNFNTLLPSQTSMTKSTSTPSYSPWTSCFNLPHLGSPSPSPFQSNPSWFPQDLFL 540
541 HNSYGVSALC
Interface Residues: 115, 116, 117, 120, 121, 126, 130, 134, 138, 143, 144, 147, 185, 186, 188, 189, 192, 193, 196, 197, 199, 200, 225
3D-footprint Homologues: 1e3o_C, 1au7_A, 7xrc_C, 1o4x_A, 3a01_E, 3d1n_M, 4xrs_G, 3cmy_A, 1jgg_B, 5zfz_A, 2lkx_A, 2hdd_A, 2r5y_A, 1puf_B, 1fjl_B, 5hod_A, 3lnq_A, 2hos_A, 1b72_A, 6a8r_A, 5jlw_D, 2ld5_A, 1le8_A, 7q3o_C, 1ig7_A, 2h1k_B, 7psx_B, 4cyc_A, 1puf_A, 6fqp_B, 5flv_I, 5zjt_E, 4qtr_D, 6fqq_E, 1nk2_P, 4xrm_B, 1zq3_P, 3rkq_B, 1du0_A, 6es3_K, 6m3d_C
Binding Motifs: M1172_1.02 acCAATCr
Related annotations: PaperBLAST

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