Transcription Factor
Accessions: | T100366_1.02 (CISBP 1.02) |
Names: | HD2, T100366_1.02; |
Organisms: | Pleurotus djamor |
Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
Notes: | experiment type:PBM, family:Homeodomain |
Length: | 550 |
Pfam Domains: | 147-200 Homeobox domain 165-197 Homeobox KN domain |
Sequence: (in bold interface residues) | 1 MTDTPTRFENALHRIINVSESLRSKTKLDPQTSNTGCRSPISSQPLSIDFPPPPNILPSL 60 61 RSKGVSEQAAKKLTDIFNSKCHILQSLLRNKLHDIQSHSSLPIHHLLSSYAQKTYQEDIL 120 121 RFEDELHRVAALHLDKLQADQVKPAAKTSFNADFVPFLEKYFEFNAYPSAADRSLMARKS 180 181 MMTPRQIEVWFQNHRNRARKEGKCLPRLRLAEELPKDLCLETLEERMSGYIASETDKFSS 240 241 DGSEVENNDSLNQGDELAIASEKKSLSANLLEPPYTIPPPYVTPRTSFLHASVPECISVL 300 301 SGAPLPWPRSPSISPTSPSKLRPLTQSQLDEFSDLFARLTVRDRSKKAVRGRATPLPLNH 360 361 RHISDCAATCATTTVLCRGRHPSFVSTPNTPSSSLFAPLPLRERSSPDMEVRSPSVGPLD 420 421 TASPSSKRRKSPQLPRRVPGSSPSSHIRVQHMHHPYASPSRASSSSSSCRTPSSSSESLS 480 481 TPRTPDNFNTLLPSQTSMTKSTSTPSYSPWTSCFNLPHLGSPSPSPFQSNPSWFPQDLFL 540 541 HNSYGVSALC |
Interface Residues: | 115, 116, 117, 120, 121, 126, 130, 134, 138, 143, 144, 147, 185, 186, 188, 189, 192, 193, 196, 197, 199, 200, 225 |
3D-footprint Homologues: | 1e3o_C, 1au7_A, 7xrc_C, 1o4x_A, 3a01_E, 3d1n_M, 4xrs_G, 3cmy_A, 1jgg_B, 5zfz_A, 2lkx_A, 2hdd_A, 2r5y_A, 1puf_B, 1fjl_B, 5hod_A, 3lnq_A, 2hos_A, 1b72_A, 6a8r_A, 5jlw_D, 2ld5_A, 1le8_A, 7q3o_C, 1ig7_A, 2h1k_B, 7psx_B, 4cyc_A, 1puf_A, 6fqp_B, 5flv_I, 5zjt_E, 4qtr_D, 6fqq_E, 1nk2_P, 4xrm_B, 1zq3_P, 3rkq_B, 1du0_A, 6es3_K, 6m3d_C |
Binding Motifs: | M1172_1.02 acCAATCr |
Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.