Transcription Factor

Accessions: T16585 (AthalianaCistrome v4_May2016)
Names: ANAC050, AT3G10480, T16585;
Organisms: Arabidopsis thaliana
Libraries: AthalianaCistrome v4_May2016 1
1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Notes: ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:NAC
Length: 526
Pfam Domains: 27-187 No apical meristem (NAM) protein
Sequence:
(in bold interface residues)
1 MGRESLAVVSSPPSATAPSTAVSATSLAPGFRFHPTDEELVSYYLKRKVLGKPVRFDAIG 60
61 EVDIYKHEPWDLAEKILCSYLALNCFKNFVFACATVMFACATVMFALFSKLKTRDQEWYF 120
121 FSALDKKYGNGARMNRATNKGYWKATGKDREIRRDIQLLGMKKTLVFHSGRAPDGLRTNW 180
181 VMHEYRLVEYETETNGSLLQDAYVLCRVFHKNNIGPPSGNRYAPFMEEEWADGGGALIPG 240
241 IDVRVRVEALPQANGNNQMDQWADLLKLHNSIKFAITFCRTQLNLTALSNERCSTREIFI 300
301 VFWLICKEMHSASKDLININELPRDATPMDIEPNQQNHHESAFKPQESNNHSGYEEDEDT 360
361 LKREHAEEDERPPSLCILNKEAPLPLLQYKRRRQNESNNNSSRNTQDHCSSTITTVDNTT 420
421 TLISSSAAAATNTAISALLEFSLMGISDKKENQQKEETSPPSPIASPEEKVNDLQKEVHQ 480
481 MSVERETFKLEMMSAEAMISILQSRIDALRQENEELKKKNASGQAS
Interface Residues: 128, 133, 135, 144, 146, 148, 168, 172, 173, 174, 177
3D-footprint Homologues: 7xp3_B, 3swp_A
Binding Motifs: M0644 TaCTTGkrdarCAAG
M0650 CTTGyrwhrCAMGtwA
Related annotations: PaperBLAST

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.