Transcription Factor

Accessions: Q5N9C9 (JASPAR 2024)
Names: Q5N9C9_ORYSJ
Organisms: Oryza sativa, Oryza sativa Japonica Group
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Uniprot: Q5N9C9
Length: 257
Pfam Domains: 67-125 linker histone H1 and H5 family
Sequence:
(in bold interface residues)
1 MDKWRNLSFSASGLGSRDKLKVPRIKGPSSSTSPSSQTPLLVLPPNKVAEASPSADPEKS 60
61 SQDVKIPKYSSMVIEALCEIGDPNGSDVDAICHYIEQRHEVQANFRRLLTAKLRRLIAAK 120
121 KIEKIDRSYRITESYAAKVSQANKSPSPKKDPAKPLKASQNLGSFAGTSPALEAAAAAAM 180
181 KVADAEAKSHLANEHMTEAERIFKLAEETESLVTLATEIYERCSRGEILTIMQVAQSNFE 240
241 FQSVSGNGSGTGSTVLA
Interface Residues: 104, 105, 107, 109, 110, 113, 114
3D-footprint Homologues: 7rva_C
Binding Motifs: MA1030.1 wrmCCTArhy
MA1030.2 wrmCCTA
Publications: Zhong R, Ye ZH. MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genes. Plant Cell Physiol 53:368-80 (2012). [Pubmed]
Related annotations: PaperBLAST

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