Transcription Factor
Accessions: | T090254_1.02 (CISBP 1.02), Q940J1 (JASPAR 2024) |
Names: | ATHB16, T090254_1.02;, ATB16_ARATH, HD-ZIP protein ATHB-16, Homeobox-leucine zipper protein ATHB-16, Homeodomain transcription factor ATHB-16 |
Organisms: | Arabidopsis thaliana |
Libraries: | CISBP 1.02 1, JASPAR 2024 2 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
Notes: | experiment type:PBM, family:Homeodomain |
Length: | 294 |
Pfam Domains: | 59-112 Homeobox domain 114-157 Homeobox associated leucine zipper |
Sequence: (in bold interface residues) | 1 MKRLSSSDSMCGLISTSTDEQSPRGYGSNYQSMLEGYDEDATLIEEYSGNHHHMGLSEKK 60 61 RRLKVDQVKALEKNFELENKLEPERKTKLAQELGLQPRQVAVWFQNRRARWKTKQLEKDY 120 121 GVLKGQYDSLRHNFDSLRRDNDSLLQEISKIKAKVNGEEDNNNNKAITEGVKEEEVHKTD 180 181 SIPSSPLQFLEHSSGFNYRRSFTDLRDLLPNSTVVEAGSSDSCDSSAVLNDETSSDNGRL 240 241 TPPVTVTGGSFLQFVKTEQTEDHEDFLSGEEACGFFSDEQPPSLHWYSASDHWT |
Interface Residues: | 58, 60, 61, 62, 64, 98, 99, 101, 102, 105, 106, 109, 110, 112, 113 |
3D-footprint Homologues: | 1puf_A, 6a8r_A, 3l1p_A, 1au7_A, 1nk2_P, 5jlw_D, 2ld5_A, 7q3o_C, 1e3o_C, 1le8_A, 7xrc_C, 2xsd_C, 1ig7_A, 1o4x_A, 1du0_A, 4xrm_B, 3a01_E, 2h1k_B, 1jgg_B, 3rkq_B, 2lkx_A, 6es3_K, 4xrs_G, 3cmy_A, 2hdd_A, 5zfz_A, 4cyc_A, 2r5y_A, 1puf_B, 1fjl_B, 5flv_I, 8g87_X, 1b72_A, 5zjt_E, 4qtr_D, 1zq3_P, 7psx_B, 5hod_A, 3lnq_A, 2hos_A, 6m3d_C |
Binding Motifs: | M0854_1.02 TAATmATT MA0951.1 TAATmATT |
Publications: | Johannesson H., Wang Y., Engstrom P. DNA-binding and dimerization preferences of Arabidopsis homeodomain-leucine zipper transcription factors in vitro. Plant Mol. Biol. 45:63-73 (2001). [Pubmed] |
Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.