Transcription Factor
| Accessions: | P33417 (JASPAR 2024) |
| Names: | Intrastrand cross-link recognition protein, IXR1_YEAST, SSRP, Structure-specific recognition protein |
| Organisms: | Saccharomyces cerevisiae |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Length: | 597 |
| Pfam Domains: | 361-428 HMG (high mobility group) box 361-419 Domain of unknown function (DUF1898) 434-499 HMG (high mobility group) box 434-487 Domain of unknown function (DUF1898) |
| Sequence: (in bold interface residues) | 1 MNTGISPKQDDASNSNLLNIGQDHSLQYQGLEHNDSQYRDASHQTPHQYLNQFQAQPQQQ 60 61 QQQQQQQQQQQQQAPYQGHFQQSPQQQQQNVYYPLPPQSLTQPTSQSQQQQQQQQQQQYA 120 121 NSNSNSNNNVNVNALPQDFGYMQQTGSGQNYPTINQQQFSEFYNSFLSHLTQKQTNPSVT 180 181 GTGASSNNNSNNNNVSSGNNSTSSNPAQLAASQLNPATAAAAAANNAAGPASYLSQLPQV 240 241 QRYYPNNMNALSSLLDPSSAGNAAGNANTATHPGLLPPNLQPQLTHHQQQMQQQLQLQQQ 300 301 QQLQQQQQLQQQHQLQQQQQLQQQHHHLQQQQQQQQHPVVKKLSSTQSRIERRKQLKKQG 360 361 PKRPSSAYFLFSMSIRNELLQQFPEAKVPELSKLASARWKELTDDQKKPFYEEFRTNWEK 420 421 YRVVRDAYEKTLPPKRPSGPFIQFTQEIRPTVVKENPDKGLIEITKIIGERWRELDPAKK 480 481 AEYTETYKKRLKEWESCYPDENDPNGNPTGHSHKAMNMNLNMDTKIMENQDSIEHITANA 540 541 IDSVTGSNSNSTNPNTPVSPPISLQQQPLQQQQQQQQQQQHMLLADPTTNGSIIKNE |
| Interface Residues: | 363, 366, 368, 369, 372, 376, 387, 388, 389, 392, 423, 425, 427, 430, 436, 439, 441, 442, 445, 449, 460, 461, 462, 465, 496, 498 |
| 3D-footprint Homologues: | 3u2b_C, 1o4x_B, 3f27_D, 4s2q_D, 4y60_C, 2gzk_A, 1hry_A, 1ckt_A, 1j5n_A, 6jrp_D, 2lef_A, 7m5w_A, 1qrv_A, 3tmm_A, 3tq6_B |
| Binding Motifs: | MA0323.1 AArCCGGrAGCGGkG |
| Publications: | MacIsaac K.D, Wang T, Gordon D.B, Gifford D.K, Stormo G.D, Fraenkel E. An improved map of conserved regulatory sites for Saccharomyces cerevisiae. BMC bioinformatics 7:113 (2006). [Pubmed] |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.