Transcription Factor
| Accessions: | Q9LVW4 (JASPAR 2024), T14967 (AthalianaCistrome v4_May2016) |
| Names: | AtMYB118, MY118_ARATH, Myb-related protein 118, Protein PLANT GROWTH ACTIVATOR 37, Transcription factor MYB118, AT3G27785, MYB118, T14967; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1, AthalianaCistrome v4_May2016 2 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:MYB |
| Length: | 437 |
| Pfam Domains: | 189-235 Myb-like DNA-binding domain 192-252 Myb-like DNA-binding domain 242-283 Myb-like DNA-binding domain 244-285 Myb-like DNA-binding domain |
| Sequence: (in bold interface residues) | 1 MEFESVFKMHYPYLAAVIYDDSSTLKDFHPSLTDDFSCVHNVHHKPSMPHTYEIPSKETI 60 61 RGITPSPCTEAFEACFHGTSNDHVFFGMAYTTPPTIEPNVSHVSHDNTMWENDQNQGFIF 120 121 GTESTLNQAMADSNQFNMPKPLLSANEDTIMNRRQNNQVMIKTEQIKKKNKRFQMRRICK 180 181 PTKKASIIKGQWTPEEDKLLVQLVDLHGTKKWSQIAKMLQGRVGKQCRERWHNHLRPDIK 240 241 KDGWTEEEDIILIKAHKEIGNRWAEIARKLPGRTENTIKNHWNATKRRQHSRRTKGKDEI 300 301 SLSLGSNTLQNYIRSVTYNDDPFMTANANANIGPRNMRGKGKNVMVAVSEYDEGECKYIV 360 361 DGVNNLGLEDGRIKMPSLAAMSASGSASTSGSASGSGSGVTMEIDEPMTDSWMVMHGCDE 420 421 VMMNEIALLEMIAHGRL |
| Interface Residues: | 189, 223, 224, 225, 226, 228, 229, 233, 234, 275, 276, 279, 280, 283, 284, 285 |
| 3D-footprint Homologues: | 3osg_A, 2kdz_A, 7xur_A, 5eyb_B, 3zqc_A, 1mse_C, 6kks_A |
| Binding Motifs: | M0567 / MA1170.1 awwwyrwmCGTTACrww M0524 wwwwyGTAACGGwyr MA1170.2 rwmCGTTACrww |
| Publications: | Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Related annotations: | PaperBLAST |
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