Transcription Factor
| Accessions: | P32338 (JASPAR 2024) |
| Names: | RME1_YEAST |
| Organisms: | Saccharomyces cerevisiae |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Length: | 300 |
| Pfam Domains: | 178-199 C2H2-type zinc finger 258-281 C2H2-type zinc finger |
| Sequence: (in bold interface residues) | 1 MSPCYGQNSAIAKGSWNREVLQEVQPIYHWHDFGQNMKEYSASPLEGDSSLPSSLPSSTE 60 61 DCLLLSLENTITVIAGNQRQAYDSTSSTEEGTAPQLRPDEIADSTHCITSLVDPEFRDLI 120 121 NYGRQKGANPVFIESNTTEQSHSQCILGYPQKSHVAQLYHDPKVLSTISEGQTKRGSYHC 180 181 SHCSEKFATLVEFAAHLDEFNLERPCKCPIEQCPWKILGFQQATGLRRHCASQHIGELDI 240 241 EMEKSLNLKVEKYPGLNCPFPICQKTFRRKDAYKRHVAMVHNNADSRFNKRLKKILNNTK 300 |
| Interface Residues: | 163, 164, 167, 188, 189, 190, 191, 192, 194, 195, 197, 198, 201, 222, 223, 224, 225, 228, 241, 242, 243, 244, 245, 247, 248, 269, 270, 271, 272, 275 |
| 3D-footprint Homologues: | 2i13_A, 7ysf_A, 6blw_A, 6ml4_A, 1mey_C, 2jpa_A, 4x9j_A, 1g2f_F, 2wbs_A, 1f2i_J, 2drp_D |
| Binding Motifs: | MA0370.1 YyyAAAGGaA |
| Publications: | MacIsaac K.D, Wang T, Gordon D.B, Gifford D.K, Stormo G.D, Fraenkel E. An improved map of conserved regulatory sites for Saccharomyces cerevisiae. BMC bioinformatics 7:113 (2006). [Pubmed] |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.