Transcription Factor

Accessions: AtMYB10 (AthaMYB 1.0)
Names: AtMYB10, Myb domain protein 10, MYB transcription factor, Probable MYB-like DNA-binding protein
Organisms: Arabidopsis thaliana
Libraries: AthaMYB 1.0 1
1 Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). [Pubmed]
Uniprot: Q9LTV4
Length: 240
Pfam Domains: 16-63 Myb-like DNA-binding domain
19-78 Myb-like DNA-binding domain
69-114 Myb-like DNA-binding domain
72-122 Myb-like DNA-binding domain
Sequence:
(in bold interface residues)
1 MGNRRAPCCDKSQVKRGPWSDEESERLRSFILKNGHQNWRSLPKLAGLMRCGKSCRLRWI 60
61 NYLRPGLKRGNFTKEEEDTIIHLHQAYGNKWSKIASNFPGRTDNEIKNVWNTHLKKRLVK 120
121 RSISSSSSDVTNHSVSSTSSSSSSISSVLQDVIIKSERPNQEEEFGEILVEQMACGFEVD 180
181 APQSLECLFDDSQVPPPISKPDSLQTHGKSSDHEFWSRLIEPGFDDYNEWLIFLDNQTC* 240
Interface Residues: 16, 51, 52, 53, 54, 56, 57, 61, 62, 91, 92, 103, 104, 107, 108, 111, 112, 113, 115, 116
3D-footprint Homologues: 3osg_A, 1vfc_A, 2kdz_A, 7xur_A, 3zqc_A, 6kks_A, 1mse_C, 1wte_A, 7c4r_A
Binding Motifs: AtMYB10_I wwhwGTTr
AtMYB10_II RGTdGKTr
Binding Sites: AAAAGTTA
AGGTTA
AGTAGTTA
AGTGGTTA
ATTAGTTG
GCTTGTTG
GGTAGGTG
GGTTGGTG
GTTAGTTG
TACTGTTG
Publications: Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). [Pubmed]
Related annotations: PaperBLAST

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.