Transcription Factor
| Accessions: | CCA1 (ArabidopsisPBM 20140210), P92973 (JASPAR 2024) |
| Names: | CCA1, CCA1_ARATH, MYB-related transcription factor CCA1, Protein CCA1, Protein CIRCADIAN CLOCK ASSOCIATED 1 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | ArabidopsisPBM 20140210 1, JASPAR 2024 2 1 Franco-Zorrilla J.M, López-Vidriero I, Carrasco J.L, Godoy M, Vera P, Solano R. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proceedings of the National Academy of Sciences of the United States of America : (2014). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | MYB (Myb-related) |
| Length: | 608 |
| Pfam Domains: | 24-68 Myb-like DNA-binding domain |
| Sequence: (in bold interface residues) | 1 METNSSGEDLVIKTRKPYTITKQRERWTEEEHNRFIEALRLYGRAWQKIEEHVATKTAVQ 60 61 IRSHAQKFFSKVEKEAEAKGVAMGQALDIAIPPPRPKRKPNNPYPRKTGSGTILMSKTGV 120 121 NDGKESLGSEKVSHPEMANEDRQQSKPEEKTLQEDNCSDCFTHQYLSAASSMNKSCIETS 180 181 NASTFREFLPSREEGSQNNRVRKESNSDLNAKSLENGNEQGPQTYPMHIPVLVPLGSSIT 240 241 SSLSHPPSEPDSHPHTVAGDYQSFPNHIMSTLLQTPALYTAATFASSFWPPDSSGGSPVP 300 301 GNSPPNLAAMAAATVAAASAWWAANGLLPLCAPLSSGGFTSHPPSTFGPSCDVEYTKAST 360 361 LQHGSVQSREQEHSEASKARSSLDSEDVENKSKPVCHEQPSATPESDAKGSDGAGDRKQV 420 421 DRSSCGSNTPSSSDDVEADASERQEDGTNGEVKETNEDTNKPQTSESNARRSRISSNITD 480 481 PWKSVSDEGRIAFQALFSREVLPQSFTYREEHREEEQQQQEQRYPMALDLNFTAQLTPVD 540 541 DQEEKRNTGFLGIGLDASKLMSRGRTGFKPYKRCSMEAKESRILNNNPIIHVEQKDPKRM 600 601 RLETQAST |
| Interface Residues: | 24, 59, 62, 63, 66, 67 |
| 3D-footprint Homologues: | 6j5b_C, 7d3t_D, 3osg_A, 1mse_C |
| Binding Motifs: | CCA1 aAAATATCTt CCA1_2 aAGATAyrmr MA0972.1 AAATATCT |
| Publications: | Lu S. X., Knowles S. M., Andronis C., Ong M. S., Tobin E. M. CIRCADIAN CLOCK ASSOCIATED1 and LATE ELONGATED HYPOCOTYL Function Synergistically in the Circadian Clock of Arabidopsis.. Plant Physiol. 150:834-843 (2009). [Pubmed] |
| Related annotations: | PaperBLAST |
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