Transcription Factor

						

			
Accessions: ID1 (Athamap 20091028), O65215 (JASPAR 2024)

			
Names: ID1, O65215_MAIZE
Organisms: Zea mays, Zea mays subsp. mays
Libraries: Athamap 20091028 1, JASPAR 2024 2
1 Bulow L, Engelmann S, Schindler M, Hehl R. AthaMap, integrating transcriptional and post-transcriptional data. Nucleic acids research 37:D983-6 (2009).  [Pubmed]

2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Length: 436
Pfam Domains:    95-118 Zinc-finger double-stranded RNA-binding
   96-118 Zinc-finger of C2H2 type
   96-118 C2H2-type zinc finger
Sequence: 
(in bold interface residues)		   1 MQMMMLSDLSSDDHEATGSSSYGGDMASYALSPLFLAPAASATAPLPPPPQPPAEELTNK   60
  61 QAAGGGKRKRSQPGNPDPGAEVIALSPRTLVATNRFVCEICNKGFQRDQNLQLHRRGHNL  120
 121 PWKLRQRSSLVVPSSSAAAGSGGRQQQQQGEAAPTPPRKRVYVCPEPTCVHHDPARALGD  180
 181 LTGIKKHFSRKHGEKRWCCERCGKRYAVQSDWKAHVKGCGTREYRCDCGILFSRKDSLLT  240
 241 HRAFCDALAEESARLLAAAANNGSTITTTSSSNNNDLLNASNNITPLFLPFASSPPPVVV  300
 301 AAAQNPNNTLFFLHQELSPFLQPRVTMQQQPSPYLDLHMHVDASIVTTTGGLADGTPVSF  360
 361 GLALDGSVATVGHRRLTRDFLGVDGGGRQVEELQLPLCATAAAAGASRTASCATDLTRQC  420
 421 LGGRLPPVNETWSHNF
Interface Residues: 81, 85, 107, 109, 110, 113, 132, 133, 135, 136, 137, 138, 139, 140, 141, 142, 143, 146, 151, 154, 180, 181, 182, 183, 185, 186, 207, 208, 209, 210, 211, 213, 214, 234, 235, 236, 237, 239, 240
3D-footprint Homologues: 7y3l_A, 8cuc_F, 6u9q_A, 2gli_A, 5v3j_F, 1f2i_J, 6wmi_A, 2i13_A, 5ei9_F, 1ubd_C, 1g2f_F, 5k5i_A, 5kkq_D, 6ml4_A, 1mey_C, 2lt7_A, 7y3m_I, 6e94_A, 8h9h_G, 1llm_D, 4x9j_A, 7n5w_A, 2kmk_A, 7eyi_G, 5yj3_D, 2wbs_A
Binding Motifs: ID1 TTTGTCsywwT
MA0120.1 TtkyyyyTwbYG
Binding Sites: MA0120.1.1
MA0120.1.10
MA0120.1.11
MA0120.1.12
MA0120.1.13
MA0120.1.14
MA0120.1.15
MA0120.1.16
MA0120.1.17
MA0120.1.18
MA0120.1.19
MA0120.1.2
MA0120.1.20
MA0120.1.3
MA0120.1.4
MA0120.1.5
MA0120.1.6
MA0120.1.7
MA0120.1.8
MA0120.1.9
			
Publications: Kozaki A., Hake S., Colasanti J. The maize ID1 flowering time regulator is a zinc finger protein with novel DNA binding properties.. Nucleic Acids Res. 32:1710-1720 (2004). [Pubmed]
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.