Transcription Factor
Accessions: | ZNF71 (humanC2H2ZF-ChIP Feb2015) |
Names: | ENSG00000197951, Q9NQZ8, ZNF71 |
Organisms: | Homo sapiens |
Libraries: | humanC2H2ZF-ChIP Feb2015 1 1 Najafabadi HS, Mnaimneh S, Schmitges FW, Garton M, Lam KN, Yang A, Albu M, Weirauch MT, Radovani E, Kim PM, Greenblatt J, Frey BJ, Hughes TR. C2H2 zinc finger proteins greatly expand the human regulatory lexicon. Nat Biotechnol 33:555-62 (2015). [Pubmed] |
Notes: | TF family: C2H2 experiment: ChIP-seq/MEME/B1H-RC |
Length: | 489 |
Pfam Domains: | 130-152 C2H2-type zinc finger 130-150 C2H2-type zinc finger 130-152 Zinc finger, C2H2 type 145-167 Zinc-finger double domain 157-172 C2H2-type zinc finger 158-180 Zinc finger, C2H2 type 172-196 Zinc-finger double domain 186-208 Zinc finger, C2H2 type 186-208 C2H2-type zinc finger 186-208 C2H2-type zinc finger 200-224 Zinc-finger double domain 214-236 Zinc finger, C2H2 type 214-236 C2H2-type zinc finger 214-232 C2H2-type zinc finger 228-252 Zinc-finger double domain 242-252 C2H2-type zinc finger 242-264 Zinc finger, C2H2 type 242-264 C2H2-type zinc finger 257-280 Zinc-finger double domain 270-280 C2H2-type zinc finger 270-292 Zinc finger, C2H2 type 270-292 C2H2-type zinc finger 284-308 Zinc-finger double domain 298-320 C2H2-type zinc finger 298-320 Zinc finger, C2H2 type 298-320 C2H2-type zinc finger 312-336 Zinc-finger double domain 326-348 C2H2-type zinc finger 326-348 Zinc finger, C2H2 type 326-348 C2H2-type zinc finger 342-364 Zinc-finger double domain 353-374 C2H2-type zinc finger 354-376 Zinc finger, C2H2 type 354-376 C2H2-type zinc finger 368-392 Zinc-finger double domain 381-404 C2H2-type zinc finger 382-404 Zinc finger, C2H2 type 382-404 C2H2-type zinc finger 397-420 Zinc-finger double domain 410-432 Zinc finger, C2H2 type 410-432 C2H2-type zinc finger 410-430 C2H2-type zinc finger 426-447 Zinc-finger double domain 438-460 Zinc finger, C2H2 type 438-460 C2H2-type zinc finger 438-453 C2H2-type zinc finger 452-477 Zinc-finger double domain 466-486 C2H2-type zinc finger 466-488 Zinc finger, C2H2 type 466-488 C2H2-type zinc finger |
Sequence: (in bold interface residues) | 1 MKELDPKNDISEDKLSVVGEATGGPTRNGARGPGSEGVWEPGSWPERPRGDAGAEWEPLG 60 61 IPQGNKLLGGSVPACHELKAFANQGCVLVPPRLDDPTEKGACPPVRRGKNFSSTSDLSKP 120 121 PMPCEEKKTYDCSECGKAFSRSSSLIKHQRIHTGEKPFECDTCGKHFIERSSLTIHQRVH 180 181 TGEKPYACGDCGKAFSQRMNLTVHQRTHTGEKPYVCDVCGKAFRKTSSLTQHERIHTGEK 240 241 PYACGDCGKAFSQNMHLIVHQRTHTGEKPYVCPECGRAFSQNMHLTEHQRTHTGEKPYAC 300 301 KECGKAFNKSSSLTLHQRNHTGEKPYVCGECGKAFSQSSYLIQHQRFHIGVKPFECSECG 360 361 KAFSKNSSLTQHQRIHTGEKPYECYICKKHFTGRSSLIVHQIVHTGEKPYVCGECGKAFS 420 421 QSAYLIEHQRIHTGEKPYRCGQCGKSFIKNSSLTVHQRIHTGEKPYRCGECGKTFSRNTN 480 481 LTRHLRIHT |
Interface Residues: | 130, 141, 142, 143, 144, 147, 151, 168, 169, 171, 172, 175, 196, 197, 198, 199, 200, 202, 203, 224, 225, 226, 227, 228, 230, 231, 232, 233, 234, 237, 253, 254, 255, 256, 258, 259, 280, 281, 282, 283, 284, 287, 308, 309, 310, 311, 312, 315, 336, 337, 338, 339, 340, 343, 346, 364, 365, 366, 367, 368, 371, 393, 395, 396, 398, 399, 405, 419, 420, 421, 422, 423, 424, 427, 431, 448, 449, 450, 451, 452, 453, 455, 476, 477, 478, 479, 480, 482, 483 |
3D-footprint Homologues: | 2kmk_A, 8ssu_A, 2i13_A, 8gn3_A, 8cuc_F, 7y3l_A, 3uk3_C, 2gli_A, 1g2f_F, 5k5l_F, 7w1m_H, 6ml4_A, 1llm_D, 6wmi_A, 7n5w_A, 6blw_A, 5k5i_A, 4m9v_C, 2jpa_A, 8ssq_A, 5ei9_F, 7txc_E, 5kl3_A, 1tf3_A, 5und_A, 1tf6_A, 5v3j_F, 4x9j_A, 2wbs_A, 1mey_C, 1f2i_J, 5kkq_D, 6u9q_A, 7y3m_I, 6e94_A, 7ysf_A, 5yel_A, 5yj3_D, 7eyi_G, 8h9h_G, 2lt7_A, 1ubd_C, 6jnm_A, 6a57_A, 2drp_D |
Binding Motifs: | ZNF71_ChIP rGRAAayGAAA |
Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.