Transcription Factor
| Accessions: | T100214_1.02 (CISBP 1.02), P34161 (JASPAR 2024) |
| Names: | T100214_1.02;, YOX1, YOX1_YEAST |
| Organisms: | Saccharomyces cerevisiae |
| Libraries: | CISBP 1.02 1, JASPAR 2024 2 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | experiment type:PBM, family:Homeodomain |
| Length: | 385 |
| Pfam Domains: | 177-233 Homeobox domain |
| Sequence: (in bold interface residues) | 1 MSQETKMLPSLSSLLSGTEISSSPVSPSFTNPRTSFHLDDRGTIKLPPLNTSINRPRSVE 60 61 SALRHTVTSLHENSSAYGDDMLKHTQSDSALSSQLNSSQETVDESHENLLLTPLNSKKRD 120 121 YSVSSKKNDILTPLSAAKSIIIPSASKEKRRAFAFITHSQETFPKKEPKIDNAPLARRKR 180 181 RRTSSQELSILQAEFEKCPAPSKEKRIELAESCHMTEKAVQIWFQNKRQAVKRQRIATSK 240 241 STTIIQTVSPPSPPLDVHATPLASRVKADILRDGSSCSRSSSSSPLENTPPRPHHSLNRR 300 301 SSTPSIKRSQALTFHLNPQKKTLTPVKTSPNSRVNKLINSIDHSPSKAKRPVSNPSGSPK 360 361 RKRKFGFKIVDQQPLKDLDPNAFRG |
| Interface Residues: | 177, 178, 179, 180, 181, 182, 218, 219, 221, 222, 225, 226, 229, 230, 231, 232, 233, 235 |
| 3D-footprint Homologues: | 5zfz_A, 4j19_B, 2h1k_B, 3cmy_A, 1puf_A, 6a8r_A, 4cyc_A, 1fjl_B, 3lnq_A, 2lkx_A, 1jgg_B, 3d1n_M, 2ld5_A, 1nk2_P, 1b72_A, 5hod_A, 1puf_B, 3rkq_B, 3l1p_A, 5jlw_D, 7xrc_C, 1ig7_A, 1e3o_C, 1le8_A, 7q3o_C, 1au7_A, 2xsd_C, 3a01_E, 6m3d_C, 5flv_I, 1o4x_A, 8g87_X, 1du0_A, 5zjt_E, 4qtr_D, 2hdd_A, 7psx_B, 2r5y_A, 4xrm_B, 6es3_K, 4xrs_G, 2hos_A |
| Binding Motifs: | M1138_1.02 aTtAATTa MA0433.1 yTAATTaa MA0433.2 yTAATTa |
| Publications: | Badis G, Chan E.T, van Bakel H, Pena-Castillo L, Tillo D, Tsui K, Carlson C.D, Gossett A.J, Hasinoff M.J, Warren C.L, Gebbia M, Talukder S, Yang A, Mnaimneh S, Terterov D, Coburn D, Li Yeo A, Yeo Z.X, Clarke N.D, Lieb J.D, Ansari A.Z, Nislow C, Hughes T.R. A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters. Molecular cell 32:878-87 (2008). [Pubmed] |
| Related annotations: | PaperBLAST |
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