Transcription Factor

						

			
Accessions: 5yef_B (3D-footprint 20231221)

			
Names: 11-zinc finger protein, CCCTC-binding factor, CTCF_HUMAN, CTCFL paralog, Transcriptional repressor CTCF
Organisms: Homo sapiens
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Uniprot: P49711
Length: 167
Pfam Domains:     15-38 Zinc-finger double domain
    29-51 C2H2-type zinc-finger domain
    29-51 C2H2-type zinc finger
    44-65 Zinc-finger double domain
    57-79 Zinc finger, C2H2 type
    57-80 C2H2-type zinc-finger domain
    57-79 C2H2-type zinc finger
    72-96 Zinc-finger double domain
   85-108 C2H2-type zinc finger
  115-138 Zinc finger, C2H2 type
  115-138 C2H2-type zinc finger
  146-167 Zinc finger, C2H2 type
  146-167 C2H2-type zinc finger
Sequence: 
(in bold interface residues)		   1 PHKCPDCDMAFVGELVRHRRYKHTHEKPFKCSMCDYASVEVSKLKRHIRSHTGERPFQCS   60
  61 LCSYASRDTYKLKRHMRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHC  120
 121 DTVIARKSDLGVHLRKQHSYIEQGKKCRYCDAVFHERYALIQHQKSH
Interface Residues: 12, 13, 14, 17, 20, 21, 29, 39, 40, 41, 42, 43, 45, 46, 47, 48, 49, 52, 67, 68, 69, 70, 71, 72, 73, 74, 75, 82, 95, 96, 97, 98, 99, 101, 102, 103, 104, 106, 126, 127, 128, 129, 132, 135, 155, 156, 158, 159, 162
3D-footprint Homologues: 7eyi_G, 5ei9_F, 7ysf_A, 8ssq_A, 7w1m_H, 8ssu_A, 2i13_A, 5kkq_D, 1ubd_C, 2kmk_A, 1tf3_A, 7y3l_A, 7n5w_A, 1f2i_J, 6u9q_A, 5kl3_A, 1g2f_F, 6wmi_A, 1tf6_A, 5und_A, 2gli_A, 6ml4_A, 4x9j_A, 1mey_C, 6blw_A, 8h9h_G, 4m9v_C, 6e94_A, 2lt7_A, 2jpa_A, 3uk3_C, 8cuc_F, 7txc_E, 5yj3_D, 5k5i_A, 6jnm_A, 1llm_D, 6a57_A, 5v3j_F, 8gn3_A, 2wbs_A, 7y3m_I, 1yuj_A, 2drp_D, 5yel_A, 5k5l_F
Binding Motifs: 5yef_B CGCCCtCTGcnG
Binding Sites: 5yef_E
5yef_F
			
Publications: Yin M, Wang J, Wang M, Li X, Zhang M, Wu Q, Wang Y. Molecular mechanism of directional CTCF recognition of a diverse range of genomic sites. Cell Res 27:1365-1377 (2017). [Pubmed]
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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