Transcription Factor

Accessions: Q8RWU3 (JASPAR 2024), T11966 (AthalianaCistrome v4_May2016)
Names: MYB-like transcription factor, Protein LHY-CCA1-like 5, Protein REVEILLE 8, RVE8_ARATH, At3g09600, T11966;
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1, AthalianaCistrome v4_May2016 2
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Notes: ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:MYB-related
Length: 298
Pfam Domains: 43-87 Myb-like DNA-binding domain
Sequence:
(in bold interface residues)
1 MSSSPSRNPTNAEAPPPPPTSTDAVAEGSSKKVRKPYTITKSRESWTEEEHDKFLEALQL 60
61 FDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGTLAHVPPPRPKRKAAHPYPQKASKN 120
121 AQMPLQVSTSFTTTRNGDMPGYASWDDASMLLNRVISPQHELATLRGAEADIGSKGLLNV 180
181 SSPSTSGMGSSSRTVSGSEIVRKAKQPPVLHGVPDFAEVYNFIGSVFDPETRGHVEKLKE 240
241 MDPINFETVLLLMRNLTVNLSNPDLESTRKVLLSYDNVTTELPSVVSLVKNSTSDKSA
Interface Residues: 43, 78, 81, 82, 85, 86
3D-footprint Homologues: 6j5b_C, 7d3t_D, 3osg_A
Binding Motifs: M0597 / MA1182.1 AGATATTTttwt
M0586 AGATATTTttw
MA1182.2 AGATATTTt
Binding Sites: MA1182.1.1
MA1182.1.10
MA1182.1.11
MA1182.1.12
MA1182.1.13
MA1182.1.14
MA1182.1.15
MA1182.1.16 / MA1182.1.18
MA1182.1.17
MA1182.1.19
MA1182.1.2
MA1182.1.20
MA1182.1.3
MA1182.1.4
MA1182.1.5
MA1182.1.6
MA1182.1.7
MA1182.1.8
MA1182.1.9
MA1182.2.1
MA1182.2.10
MA1182.2.11
MA1182.2.12
MA1182.2.13
MA1182.2.14
MA1182.2.15
MA1182.2.16 / MA1182.2.18
MA1182.2.17
MA1182.2.19
MA1182.2.2
MA1182.2.20
MA1182.2.3
MA1182.2.4
MA1182.2.5
MA1182.2.6
MA1182.2.7
MA1182.2.8
MA1182.2.9
Publications: Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Related annotations: PaperBLAST

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