Transcription Factor

						

			
Accessions: P53243 (JASPAR 2024)

			
Names: YG2A_YEAST
Organisms: Saccharomyces cerevisiae
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Length: 804
Pfam Domains:      8-30 C2H2-type zinc finger
    36-59 Zinc finger, C2H2 type
    36-59 C2H2-type zinc finger
Sequence: 
(in bold interface residues)		   1 MAAGQKKYICSFCLKPFSRSEHKIRHERSHAGVKPFQCQVCKHSFVRRDLLQRHIRTVHR   60
  61 TFLLSSYASMTGDKADIPVSLGVGDVDSTSPRDIKMETLVNSMIKVNSGLINIHYHSSNV  120
 121 EKMDKQQRCVIGKESSSLKKGKSRFKQVKSRLESSISVKILQEYSLDFISSRDILTFFRM  180
 181 GVSHLVENKIFQNFFPDLFSSLQNDELVESFWINKPFGLIIACLGMSISLNQDSQKLWFI  240
 241 CCTNLYASSSKHDNDFDTEDILSQTEQHDVFALILFYSLLVMLENNIPVSNSIKKFDVFS  300
 301 MLQDILKPFTVASSSYHYLNSKENAWFIFDLWVNILRDSNNFNNDSLLIFGWFVNQEFIS  360
 361 SNPLKDFIYKGPSMSTTDLTLKHINILADSAYVYFIIKKTYPQELPSDFRVHDLLVYLNE  420
 421 CFVMQQPIKPETSANPSLFANVMNARITDCKSKSNWLLWETIWFEFINNLTLRNGTTRNI  480
 481 WFIDNFPQVSTSCLLHHSSSFVDETLITTNLSIISMLLNLKSFTLASLNPRNIQLITDIV  540
 541 SFQLKLFSSELIASSDVSPSQVSQLLVNPNVHLMLYFWFDTIYVQRQSYLSSTEKEEFEK  600
 601 VEVFVNDYIITHQKNLVTDLHSILFDFWSDSFIAYHILLHAIVSSLRDNILYPYLIYSPH  660
 661 LNDQTKALLTDISNWSCFALQQPFRKTSRGSLSGASDMKSFSVASCLPLSPNFLKRDSNC  720
 721 NKILLPPLDIKAIEPISTSNYTYVNSAPKQQEKEQPLLRATGNNINLVQTIVVPPQVNME  780
 781 SQEFSASSTDNKQSKNIEIFSQIK
Interface Residues: 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 29, 46, 47, 48, 49, 50, 51, 52, 53, 54
3D-footprint Homologues: 7w1m_H, 7ysf_A, 6jnm_A, 3uk3_C, 8cuc_F, 2kmk_A, 1tf3_A, 7y3l_A, 1g2f_F, 7n5w_A, 1tf6_A, 6u9q_A, 5yel_A, 4x9j_A, 2i13_A, 1llm_D, 7txc_E, 6e94_A, 5kl3_A, 2wbs_A, 1ubd_C, 6wmi_A, 5ei9_F, 2jpa_A, 8ssq_A, 1mey_C, 2drp_D, 1f2i_J, 6ml4_A, 5v3j_F, 2gli_A, 6blw_A, 2lt7_A, 8h9h_G, 5und_A, 5k5i_A, 4m9v_C, 5kkq_D, 7y3m_I, 7eyi_G, 6a57_A, 8gn3_A, 5yj3_D
Binding Motifs: MA0425.1 rCCCCdChyyddbr
MA0425.2 CCCCdC
			
Publications: Badis G, Chan E.T, van Bakel H, Pena-Castillo L, Tillo D, Tsui K, Carlson C.D, Gossett A.J, Hasinoff M.J, Warren C.L, Gebbia M, Talukder S, Yang A, Mnaimneh S, Terterov D, Coburn D, Li Yeo A, Yeo Z.X, Clarke N.D, Lieb J.D, Ansari A.Z, Nislow C, Hughes T.R. A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters. Molecular cell 32:878-87 (2008). [Pubmed]
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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