Transcription Factor
| Accessions: | Q39237 (JASPAR 2024), T24993 (AthalianaCistrome v4_May2016) |
| Names: | AtbZIP47, bZIP transcription factor 47, DNA-binding protein TGA1a-like protein, TGA1_ARATH, Transcription factor TGA1, AT5G65210, T24993;, TGA1 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1, AthalianaCistrome v4_May2016 2 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Uniprot: | Q39237 |
| Notes: | ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:bZIP |
| Length: | 368 |
| Pfam Domains: | 82-118 bZIP transcription factor 83-130 Basic region leucine zipper 169-246 Seed dormancy control |
| Sequence: (in bold interface residues) | 1 MNSTSTHFVPPRRVGIYEPVHQFGMWGESFKSNISNGTMNTPNHIIIPNNQKLDNNVSED 60 61 TSHGTAGTPHMFDQEASTSRHPDKIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLIQL 120 121 EQELDRARQQGFYVGNGIDTNSLGFSETMNPGIAAFEMEYGHWVEEQNRQICELRTVLHG 180 181 HINDIELRSLVENAMKHYFELFRMKSSAAKADVFFVMSGMWRTSAERFFLWIGGFRPSDL 240 241 LKVLLPHFDVLTDQQLLDVCNLKQSCQQAEDALTQGMEKLQHTLADCVAAGQLGEGSYIP 300 301 QVNSAMDRLEALVSFVNQADHLRHETLQQMYRILTTRQAARGLLALGEYFQRLRALSSSW 360 361 ATRHREPT |
| Interface Residues: | 92, 95, 96, 99, 100 |
| 3D-footprint Homologues: | 1dh3_C |
| Binding Motifs: | MA0588.1 ksvTGACGTrd M0195 wwdrTGACGTCAkCa M0209 dwtGmTGACGTCAyy MA0588.2 svTGACGT |
| Binding Sites: | MA0588.1.1 MA0588.1.10 MA0588.1.11 MA0588.1.12 MA0588.1.13 MA0588.1.14 MA0588.1.15 MA0588.1.16 MA0588.1.17 MA0588.1.18 MA0588.1.19 MA0588.1.2 MA0588.1.20 MA0588.1.3 MA0588.1.4 MA0588.1.5 MA0588.1.6 MA0588.1.7 MA0588.1.8 MA0588.1.9 MA0588.2.1 MA0588.2.10 MA0588.2.11 MA0588.2.12 MA0588.2.13 MA0588.2.14 MA0588.2.15 MA0588.2.16 MA0588.2.17 MA0588.2.18 MA0588.2.19 MA0588.2.2 MA0588.2.20 MA0588.2.3 MA0588.2.4 MA0588.2.5 MA0588.2.6 MA0588.2.7 MA0588.2.8 MA0588.2.9 |
| Publications: | Schindler U., Beckmann H., Cashmore A. R. TGA1 and G-box binding factors: two distinct classes of Arabidopsis leucine zipper proteins compete for the G-box-like element TGACGTGG.. Plant Cell 4:1309-1319 (1992). [Pubmed] |
| Related annotations: | PaperBLAST |
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