Transcription Factor
| Accessions: | T090551_1.02 (CISBP 1.02), A8X4D9 (JASPAR 2024) |
| Names: | Cbr-dsc-1, T090551_1.02;, A8X4D9_CAEBR |
| Organisms: | Caenorhabditis briggsae |
| Libraries: | CISBP 1.02 1, JASPAR 2024 2 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | experiment type:PBM, family:Homeodomain |
| Length: | 311 |
| Pfam Domains: | 181-237 Homeobox domain |
| Sequence: (in bold interface residues) | 1 MDPNTNLSNVFDFPDLPMALPKIEIPDTPEFPMHSPSLDLQHFDPPRNLVPHLARRWSCD 60 61 DSKHAVDELPASYYHNLGFALHNHIQMSNQRYLSDFNCPSTVSTIPSAHDSGQLPPLSPY 120 121 DHIGVQDPHLFSSHAYGNSMIPDSSYFDNGSRSISAPTIGNPVIISSAMSSGNSQSCGGK 180 181 RRFRTNFTEHQSLFLEDSFKESHYPDHKAKRHMADFLNIPEDRITVWFQNRRAKWRRKEH 240 241 RQRDHNRSTETFSNTPNTSFDYPCFAGHSNQEADVKPMPGIYPDPAQQGSHDQFQLPPLS 300 301 NATAAFLKNLD |
| Interface Residues: | 181, 182, 183, 184, 222, 223, 225, 226, 229, 230, 233, 234, 237 |
| 3D-footprint Homologues: | 5zfz_A, 1ig7_A, 2h1k_B, 1puf_A, 6a8r_A, 3cmy_A, 1fjl_B, 3d1n_M, 1zq3_P, 1jgg_B, 3lnq_A, 2lkx_A, 1nk2_P, 2ld5_A, 6es3_K, 7q3o_C, 1b72_A, 4cyc_A, 6m3d_C, 5flv_I, 3l1p_A, 5zjt_E, 3a01_E, 5hod_A, 2hdd_A, 7psx_B, 5jlw_D, 3rkq_B, 2r5y_A, 1puf_B, 4xrs_G, 2hos_A, 2xsd_C, 7xrc_C, 4j19_B, 1e3o_C, 1le8_A, 1au7_A, 1o4x_A, 1du0_A, 6wig_A, 8g87_X, 4qtr_D |
| Binding Motifs: | M0870_1.02 ryTAATTAry MA0919.1 ryTAATTAry MA0919.2 TAATTA |
| Publications: | Noyes M.B, Christensen R.G, Wakabayashi A, Stormo G.D, Brodsky M.H, Wolfe S.A. Analysis of homeodomain specificities allows the family-wide prediction of preferred recognition sites. Cell 133:1277-89 (2008). [Pubmed] |
| Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.