Transcription Factor

Accessions: 4ldx_B (3D-footprint 20231221)
Names: ARFA_ARATH, Auxin response factor 1
Organisms: Arabidopsis thaliana
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Uniprot: Q8L7G0
Length: 337
Pfam Domains: 110-211 B3 DNA binding domain
236-314 Auxin response factor
Sequence:
(in bold interface residues)
1 LSDALCRELWHACAGPLVTLPREGERVYYFPEGHMEQLEASMHQGLEQQMPSFNLPSKIL 60
61 CKVINIQRRAEPETDEVYAQITLLPELDQSEPTSPDAPVQEPEKCTVHSFCKTLTASDTS 120
121 THGGFSVLRRHADDCLPPLDMSQQPPWQELVATDLHNSEWHFRHIFRGQPRRHLLTTGWS 180
181 VFVSSKKLVAGDAFIFLRGENEELRVGVRRHMRQQTNIPSSVISSHSMHIGVLATAAHAI 240
241 TTGTIFSVFYKPRTSRSEFIVSVNRYLEAKTQKLSVGMRFKMRFEPEKRFSGTIVGVQEN 300
301 KSSVWHDSEWRSLKVQWDEPSSVFRPERVSPWELEPL
Interface Residues: 117, 122, 123, 124, 126, 167, 169, 170, 172
3D-footprint Homologues: 6sdg_B, 6ycq_A, 7et6_A
Binding Motifs: 4ldx_AB TTGTntCCCnnnGGGAnACA
Binding Sites: 4ldx_C
4ldx_D
Publications: Boer D.R, Freire-Rios A, van den Berg W.A, Saaki T, Manfield I.W, Kepinski S, López-Vidrieo I, Franco-Zorrilla J.M, de Vries S.C, Solano R, Weijers D, Coll M. Structural basis for DNA binding specificity by the auxin-dependent ARF transcription factors. Cell 156:577-89 (2014). [Pubmed]
Related annotations: PaperBLAST

Disclaimer and license

These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.