Transcription Factor
| Accessions: | Q93WT0 (JASPAR 2024), T19598 (AthalianaCistrome v4_May2016) |
| Names: | Probable WRKY transcription factor 31, WRK31_ARATH, WRKY DNA-binding protein 31, AT4G22070, T19598;, WRKY31 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1, AthalianaCistrome v4_May2016 2 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:WRKY |
| Length: | 538 |
| Pfam Domains: | 297-355 WRKY DNA -binding domain |
| Sequence: (in bold interface residues) | 1 MFRFPVSLGGSRDEDRHDQITPLDDHRVVVDEVDFFSEKRDRVSRENINDDDDEGNKVLI 60 61 KMEGSRVEENDRSRDVNIGLNLLTANTGSDESTVDDGLSMDMEDKRAKIENAQLQEELKK 120 121 MKIENQRLRDMLSQATTNFNALQMQLVAVMRQQEQRNSSQDHLLAQESKAEGRKRQELQI 180 181 MVPRQFMDLGPSSGAAEHGAEVSSEERTTVRSGSPPSLLESSNPRENGKRLLGREESSEE 240 241 SESNAWGNPNKVPKHNPSSSNSNGNRNGNVIDQSAAEATMRKARVSVRARSEAAMISDGC 300 301 QWRKYGQKMAKGNPCPRAYYRCTMAGGCPVRKQVQRCAEDRSILITTYEGNHNHPLPPAA 360 361 TAMASTTTAAASMLLSGSMSSQDGLMNPTNLLARAILPCSSSMATISASAPFPTITLDLT 420 421 NSPNGNNPNMTTNNPLMQFAQRPGFNPAVLPQVVGQAMYNNQQQSKFSGLQLPAQPLQIA 480 481 ATSSVAESVSAASAAIASDPNFAAALAAAITSIMNGSSHQNNNTNNNNVATSNNDSRQ |
| Interface Residues: | 303, 304, 305, 307, 308, 319 |
| 3D-footprint Homologues: | 6j4g_B, 6ir8_A, 6j4e_B, 6j4f_F, 7z0u_A |
| Binding Motifs: | M0841 / MA1307.1 dkrwwwrmmaaRGTCAACg M0819 dkcGTTGACywtk MA1307.2 hrwwrGTCAACGcyrdtt MA1307.3 rGTCAACG |
| Binding Sites: | MA1307.3.1 / MA1307.3.10 / MA1307.3.14 / MA1307.3.17 / MA1307.3.18 / MA1307.3.2 / MA1307.3.4 / MA1307.3.5 / MA1307.3.7 / MA1307.3.8 / MA1307.3.9 MA1307.3.15 MA1307.2.1 MA1307.2.7 MA1307.2.8 MA1307.2.11 MA1307.2.12 MA1307.2.13 MA1307.2.14 MA1307.2.15 MA1307.2.17 MA1307.2.2 MA1307.2.18 MA1307.2.3 MA1307.2.4 MA1307.2.5 MA1307.2.6 MA1307.2.10 MA1307.2.16 MA1307.2.19 MA1307.2.20 MA1307.2.9 MA1307.3.12 / MA1307.3.13 / MA1307.3.20 MA1307.3.6 MA1307.3.3 MA1307.3.19 MA1307.3.11 MA1307.3.16 |
| Publications: | Yu D, Chen C, Chen Z. 2001. Evidence for an important role of WRKY DNA binding proteins in the regulation of NPR1 gene expression. Plant Cell. 13:1527-40. [Pubmed] |
| Related annotations: | PaperBLAST |
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