Transcription Factor

Accessions: A0A1P8ATX4 (JASPAR 2024)
Names: A0A1P8ATX4_ARATH
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Length: 630
Pfam Domains: 58-108 Myb/SANT-like DNA-binding domain
395-480 Myb/SANT-like DNA-binding domain
419-458 Myb/SANT-like DNA-binding domain
Sequence:
(in bold interface residues)
1 MSFWDVFDFENPKTLFTSKKKKKKSDRTVTIKIFQLITTTKNKIKLENLNYFHVFGNRKL 60
61 LELGYKRSSKKCKEKFENVQKYYKRTKETRGGRHDGKAYKFFSQLEALNTTPPSSSLDVT 120
121 PLSVANPILMPSSSSSPFPVFSQPQPQTQTQPPQTHNVSFTPTPPPLPLPSMGPIFTGVT 180
181 FSSHSSSTASGMGSDDDDDDMDVDQANIAGSSSRKRKRGNRGGGGKMMELFEGLVRQVMQ 240
241 KQAAMQRSFLEALEKREQERLDREEAWKRQEMARLAREHEVMSQERAASASRDAAIISLI 300
301 QKITGHTIQLPPSLSSQPPPPYQPPPAVTKRVAEPPLSTAQSQSQQPIMAIPQQQILPPP 360
361 PPSHPHAHQPEQKQQQQPQQEMVMSSEQSSLPSSSRWPKAEILALINLRSGMEPRYQDNV 420
421 PKGLLWEEISTSMKRMGYNRNAKRCKEKWENINKYYKKVKESNKKRPQDAKTCPYFHRLD 480
481 LLYRNKVLGSGGGSSTSGLPQDQKQSPVTAMKPPQEGLVNVQQTHGSASTEEEEPIEESP 540
541 QGTEKPEDLVMRELIQQQQQLQQQESMIGEYEKIEESHNYNNMEEEEDQEMDEEELDEDE 600
601 KSAAFEIAFQSPANRGGNGHTEPPFLTMVQ
Interface Residues: 443, 446, 447
3D-footprint Homologues: 3osg_A
Binding Motifs: MA1661.1 wwGGTwAAAAww
MA1661.2 GGTwAAAA
Binding Sites: MA1661.2.12
MA1661.1.1
MA1661.1.10
MA1661.1.11 / MA1661.1.9
MA1661.1.10 / MA1661.1.12
MA1661.1.11 / MA1661.1.13
MA1661.1.12 / MA1661.1.14
MA1661.1.13 / MA1661.1.15
MA1661.1.14 / MA1661.1.16
MA1661.1.15 / MA1661.1.17
MA1661.1.16 / MA1661.1.18
MA1661.1.17 / MA1661.1.19
MA1661.1.1 / MA1661.1.2
MA1661.1.18 / MA1661.1.20
MA1661.1.3
MA1661.1.3 / MA1661.1.4
MA1661.1.4 / MA1661.1.5
MA1661.1.5 / MA1661.1.6
MA1661.1.6 / MA1661.1.7
MA1661.1.7 / MA1661.1.8
MA1661.1.8 / MA1661.1.9
MA1661.1.19
MA1661.1.2
MA1661.1.20
MA1661.2.1 / MA1661.2.11 / MA1661.2.13 / MA1661.2.16 / MA1661.2.17 / MA1661.2.20 / MA1661.2.3 / MA1661.2.4
MA1661.2.10
MA1661.2.14 / MA1661.2.19
MA1661.2.15
MA1661.2.18
MA1661.2.2
MA1661.2.5
MA1661.2.6
MA1661.2.7
MA1661.2.8 / MA1661.2.9
Publications: Yoo CY, Pence HE, Jin JB, Miura K, Gosney MJ, Hasegawa PM, Mickelbart MV. The Arabidopsis GTL1 transcription factor regulates water use efficiency and drought tolerance by modulating stomatal density via transrepression of SDD1. Plant Cell 22:4128-41 (2010). [Pubmed]
Related annotations: PaperBLAST

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.