Transcription Factor
| Accessions: | UP00504A (UniPROBE 20160601) |
| Names: | Bagpipe, Bap, bgp, CG7902, Dmel\CG7902, dNK-3, Homeobox protein bagpipe, Homeobox protein NK-3, NK3 |
| Organisms: | Drosophila melanogaster |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Description: | Bagpipe: Bagpipe is expressed in a segmented pattern in visceral muscle and in a subset of cardiac muscles. It’s Loss of activity results in segmental gaps in midgut visceral muscle. |
| Length: | 89 |
| Pfam Domains: | 16-72 Homeobox domain |
| Sequence: (in bold interface residues) | 1 SESPLSHDGSGLSRKKRSRAAFSHAQVFELERRFAQQRYLSGPERSEMAKSLRLTETQVK 60 61 IWFQNRRYKTKRKQIQQHEAALLGASKRV |
| Interface Residues: | 16, 17, 18, 19, 57, 58, 60, 61, 64, 65, 68, 69, 71, 72 |
| 3D-footprint Homologues: | 3d1n_M, 1fjl_B, 5zfz_A, 1ig7_A, 2h1k_B, 1puf_A, 6a8r_A, 3cmy_A, 1zq3_P, 6m3d_C, 3lnq_A, 2lkx_A, 1jgg_B, 6es3_K, 1nk2_P, 2ld5_A, 7q3o_C, 1au7_A, 4xrs_G, 2hos_A, 4cyc_A, 1b72_A, 5flv_I, 3l1p_A, 5zjt_E, 3a01_E, 7psx_B, 5hod_A, 2hdd_A, 5jlw_D, 3rkq_B, 2r5y_A, 7xrc_C, 2xsd_C, 1le8_A, 4j19_B, 1e3o_C, 1k61_B, 1o4x_A, 8g87_X, 1le8_B, 1du0_A, 4qtr_D, 1mnm_C, 1puf_B |
| Binding Motifs: | UP00504A_1 GrayyrrCCACTTAryyytgaw |
| Binding Sites: | AAGTACTT ACACTTAA ACCACTTA ACTTAAGT AGCACTTA AGTACTTA ATAAGTGG CACTTAAA CACTTAAC CACTTAAG CCACTTAA CCACTTAC CCACTTAG CCCACTTA GCACTTAA GCCACTTA GGCACTTA GGTACTTA GTACTTAA TAAGTGGA |
| Publications: | Busser BW, Shokri L, Jaeger SA, Gisselbrecht SS, Singhania A, Berger MF, Zhou B, Bulyk ML, Michelson AM. Molecular mechanism underlying the regulatory specificity of a Drosophila homeodomain protein that specifies myoblast identity. Development 139:1164-74 (2012). [Pubmed] |
| Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.