Transcription Factor

Accessions: P31277 (JASPAR 2024)
Names: Homeobox protein Hox-4F, Homeobox protein Hox-D11, HXD11_HUMAN
Organisms: Homo sapiens
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Uniprot: P31277
Length: 338
Pfam Domains: 26-189 Protein of unknown function (DUF3528)
267-323 Homeobox domain
Sequence:
(in bold interface residues)
1 MNDFDECGQSAASMYLPGCAYYVAPSDFASKPSFLSQPSSCQMTFPYSSNLAPHVQPVRE 60
61 VAFRDYGLERAKWPYRGGGGGGSAGGGSSGGGPGGGGGGAGGYAPYYAAAAAAAAAAAAA 120
121 EEAAMQRELLPPAGRRPDVLFKAPEPVCAAPGPPHGPAGAASNFYSAVGRNGILPQGFDQ 180
181 FYEAAPGPPFAGPQPPPPPAPPQPEGAADKGDPRTGAGGGGGSPCTKATPGSEPKGAAEG 240
241 SGGDGEGPPGEAGAEKSSSAVAPQRSRKKRCPYTKYQIRELEREFFFNVYINKEKRLQLS 300
301 RMLNLTDRQVKIWFQNRRMKEKKLNRDRLQYFTGNPLF
Interface Residues: 265, 266, 267, 268, 269, 270, 308, 309, 311, 312, 315, 316, 319, 320, 323
3D-footprint Homologues: 6fqp_B, 3a01_E, 1fjl_B, 6a8r_A, 1ig7_A, 2h1k_B, 5zfz_A, 1puf_A, 3cmy_A, 3d1n_M, 1nk2_P, 1zq3_P, 6m3d_C, 3lnq_A, 2lkx_A, 1jgg_B, 2ld5_A, 6es3_K, 7q3o_C, 1b72_A, 5jlw_D, 4xrs_G, 7psx_B, 3rkq_B, 5flv_I, 2hdd_A, 5zjt_E, 4cyc_A, 2r5y_A, 1puf_B, 5hod_A, 2hos_A, 7xrc_C, 2xsd_C, 1le8_A, 1e3o_C, 1au7_A, 4qtr_D, 1o4x_A, 1le8_B, 1du0_A, 1mnm_C, 1k61_B, 6fqq_E
Binding Motifs: MA0908.1 rTCGTAAAaw
MA0908.2 rTCGTAAAa
Publications: Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed]
Related annotations: PaperBLAST

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