Transcription Factor
| Accessions: | Q93WV4 (JASPAR 2024), T01235 (AthalianaCistrome v4_May2016), WRKY71 (EEADannot 2023-12-22) |
| Names: | Probable WRKY transcription factor 71, WRK71_ARATH, WRKY DNA-binding protein 71, WRKY transcription factor 71, AT1G29860, T01235;, WRKY71, WRKY71 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1, AthalianaCistrome v4_May2016 2, EEADannot 2023-12-22 3 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] 3 Contreras-Moreira B, Sebastian A. FootprintDB: Analysis of Plant Cis-Regulatory Elements, Transcription Factors, and Binding Interfaces. Methods Mol Biol 1482:259-77 (2016) [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: DAP-seq, family:WRKY |
| Length: | 282 |
| Pfam Domains: | 136-193 WRKY DNA -binding domain |
| Sequence: (in bold interface residues) | 1 MDDHVEHNYNTSLEEVHFKSLSDCLQSSLVMDYNSLEKVFKFSPYSSPFQSVSPSVNNPY 60 61 LNLTSNSPVVSSSSNEGEPKENTNDKSDQMEDNEGDLHGVGESSKQLTKQGKKKGEKKER 120 121 EVRVAFMTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCNVKKRVERSFQDPS 180 181 IVITTYEGKHNHPIPSTLRGTVAAEHLLVHRGGGGSLLHSFPRHHQDFLMMKHSPANYQS 240 241 VGSLSYEHGHGTSSYNFNNNQPVVDYGLLQDIVPSMFSKNES |
| Interface Residues: | 142, 143, 144, 146, 147, 158 |
| 3D-footprint Homologues: | 6ir8_A, 6j4e_B, 6j4f_F, 6j4g_B, 7z0u_A |
| Binding Motifs: | M0806 / MA1316.1 aAAAGTCAAMg EEAD0048 TGAChAr MA1316.2 aAAAGTCAAM |
| Binding Sites: | MA1316.2.8 MA1316.1.10 MA1316.1.20 MA1316.1.13 MA1316.1.3 MA1316.1.19 MA1316.1.2 MA1316.1.5 MA1316.1.17 MA1316.1.12 MA1316.1.6 MA1316.1.4 MA1316.1.7 MA1316.1.18 MA1316.1.1 MA1316.1.11 MA1316.1.14 MA1316.1.15 MA1316.1.16 MA1316.1.8 MA1316.1.9 MA1316.2.1 MA1316.2.10 MA1316.2.11 MA1316.2.12 MA1316.2.13 MA1316.2.14 MA1316.2.15 MA1316.2.16 MA1316.2.17 MA1316.2.18 MA1316.2.19 MA1316.2.2 MA1316.2.20 MA1316.2.3 MA1316.2.4 MA1316.2.5 MA1316.2.6 MA1316.2.7 MA1316.2.9 |
| Publications: | Yu D, Chen C, Chen Z. 2001. Evidence for an important role of WRKY DNA binding proteins in the regulation of NPR1 gene expression. Plant Cell. 13:1527-40. [Pubmed] |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.