Transcription Factor
| Accessions: | YAB1 (ArabidopsisPBM 20140210), O22152 (JASPAR 2024) |
| Names: | AFO, FIL, YAB1, Axial regulator YABBY 1, Fl-54, Protein ABNORMAL FLORAL ORGANS, Protein antherless, Protein FILAMENTOUS FLOWER, YAB1_ARATH |
| Organisms: | Arabidopsis thaliana |
| Libraries: | ArabidopsisPBM 20140210 1, JASPAR 2024 2 1 Franco-Zorrilla J.M, López-Vidriero I, Carrasco J.L, Godoy M, Vera P, Solano R. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proceedings of the National Academy of Sciences of the United States of America : (2014). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | Zn finger (C2C2-YABBY) |
| Length: | 229 |
| Pfam Domains: | 17-189 YABBY protein |
| Sequence: (in bold interface residues) | 1 MSMSSMSSPSSAVCSPDHFSPSDHLCYVQCNFCQTILAVNVPYTSLFKTVTVRCGCCTNL 60 61 LSVNMRSYVLPASNQLQLQLGPHSYFNPQDILEELRDAPSNMNMMMMNQHPTMNDIPSFM 120 121 DLHQQHEIPKAPPVNRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWA 180 181 HFPHIHFGLVPDNQPVKKTNMPQQEGEDNMVMKEGFYAPAAANVGVTPY |
| Interface Residues: | 146, 148, 149, 152, 156, 168, 169, 172 |
| 3D-footprint Homologues: | 3tq6_B, 3tmm_A |
| Binding Motifs: | YAB1 ywATmATAAt UN0415.1 AATaATwA |
| Related annotations: | PaperBLAST |
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