Transcription Factor
Accessions: | AtMYB53 (AthaMYB 1.0) |
Names: | AtMYB53, Myb domain protein 53, MYB transcription factor, Transcription factor-like protein |
Organisms: | Arabidopsis thaliana |
Libraries: | AthaMYB 1.0 1 1 Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). [Pubmed] |
Uniprot: | Q9FJP2 |
Length: | 311 |
Pfam Domains: | 14-61 Myb-like DNA-binding domain 17-76 Myb-like DNA-binding domain 67-112 Myb-like DNA-binding domain 70-121 Myb-like DNA-binding domain |
Sequence: (in bold interface residues) | 1 MGRSPSSDETGLKKGPWLPEEDDKLINYIHKHGHSSWSALPKLAGLNRCGKSCRLRWTNY 60 61 LRPDIKRGKFSAEEEETILNLHAVLGNKWSMIASHLPGRTDNEIKNFWNTHLKKKLIQMG 120 121 FDPMTHQPRTDDIFSSLSQLMSLSNLRGLVDLQQQFPMEDQALLNLQTEMAKLQLFQYLL 180 181 QPSPAPMSINNINPNILNLLIKENSVTSNIDLGFLSSHLQDFNNNNLPSLKTLDDNHFSQ 240 241 NTSPIWLHEPPSLNQTMLPTHDPCAQSVDGFGSNQASSSHDQEVAVTDSVDWPDHHLFDD 300 301 SMFPDISYQS* |
Interface Residues: | 6, 14, 49, 50, 51, 52, 54, 55, 58, 59, 60, 101, 102, 105, 106, 109, 110, 111 |
3D-footprint Homologues: | 7xur_A, 1w0t_A, 3osg_A, 1vfc_A, 2kdz_A, 3zqc_A, 5eyb_B, 6kks_A, 1mse_C |
Binding Motifs: | AtMYB53_I wamaGTTr AtMYB53_II GkTWGkTR |
Binding Sites: | GTTAGTTA AAAAGTTA ACAAGTTA GGTAGGTG GGTTGGTG GTCAGTTA GTTAGTTG TACTGTTG TGCGGTTG |
Publications: | Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). [Pubmed] |
Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.