Transcription Factor
Accessions: | P05554 (JASPAR 2024) |
Names: | C/EBP alpha, CCAAT/enhancer-binding protein alpha, CEBPA_RAT |
Organisms: | Rattus norvegicus |
Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
Uniprot: | P05554 |
Length: | 358 |
Pfam Domains: | 282-334 Basic region leucine zipper 287-338 bZIP transcription factor |
Sequence: (in bold interface residues) | 1 MESADFYEAEPRPPMSSHLQSPPHAPSNAAFGFPRGAGPAPPPAPPAAPEPLGGICEHET 60 61 SIDISAYIDPAAFNDEFLADLFQHSRQQEKAKAAAGPAGGGGDFDYPGAPAGPGGAVMSA 120 121 GAHGPPPGYGCAAAGYLDGRLEPLYERVGAPALRPLVIKQEPREEDEAKQLALAGLFPYQ 180 181 PPPPPPPPHPHASPAHLAAPHLQFQIAHCGQTTMHLQPGHPTPPPTPVPSPHPAPAMGAA 240 241 GLPGPGGSLKGLAGPHPDLRTGGGGGGGAGAGKAKKSVDKNSNEYRVRRERNNIAVRKSR 300 301 DKAKQRNVETQQKVLELTSDNDRLRKRVEQLSRELDTLRGIFRQLPESSLVKAMGNCA |
Interface Residues: | 288, 289, 292, 293, 295, 296, 299, 300 |
3D-footprint Homologues: | 2wt7_A, 6mg1_B, 1nwq_C, 5t01_B, 2c9l_Z, 5vpe_D, 2dgc_A |
Binding Motifs: | MA0019.1 rrrTGCAATmcc |
Binding Sites: | MA0019.1.1 MA0019.1.10 MA0019.1.11 MA0019.1.12 / MA0019.1.13 MA0019.1.14 MA0019.1.15 MA0019.1.16 MA0019.1.17 MA0019.1.18 MA0019.1.19 MA0019.1.2 MA0019.1.20 MA0019.1.3 MA0019.1.4 MA0019.1.5 MA0019.1.6 MA0019.1.7 MA0019.1.8 MA0019.1.9 |
Publications: | Ubeda M., Wang X.-Z., Zinszner H., Wu I., Habener J. F., Ron D. Stress-induced binding of the transcription factor CHOP to a novel DNA control element. Mol. Cell. Biol. 16:1479-1489 (1996). [Pubmed] |
Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.