Transcription Factor
| Accessions: | SigF (DBTBS 1.0) |
| Names: | RNA polymerase sigma-F factor, RPSF_BACSU, SigF, Sporulation sigma factor, Stage II sporulation protein AC |
| Organisms: | Bacillus subtilis |
| Libraries: | DBTBS 1.0 1 1 Sierro N, Makita Y, de Hoon M, Nakai K. DBTBS: a database of transcriptional regulation in Bacillus subtilis containing upstream intergenic conservation information. Nucleic acids research 36:D93-6 (2008). [Pubmed] |
| Uniprot: | P07860 |
| Length: | 255 |
| Pfam Domains: | 37-104 Sigma-70 region 2 115-187 Sigma-70 region 3 195-238 Sigma-70, region 4 199-247 Sigma-70, region 4 |
| Sequence: (in bold interface residues) | 1 MDVEVKKNGKNAQLKDHEVKELIKQSQNGDQQARDLLIEKNMRLVWSVVQRFLNRGYEPD 60 61 DLFQIGCIGLLKSVDKFDLTYDVRFSTYAVPMIIGEIQRFIRDDGTVKVSRSLKELGNKI 120 121 RRAKDELSKTLGRVPTVQEIADHLEIEAEDVVLAQEAVRAPSSIHETVYENDGDPITLLD 180 181 QIADNSEEKWFDKIALKEAISDLEEREKLIVYLRYYKDQTQSEVAERLGISQVQVSRLEK 240 241 KILKQIKVQMDHTDG |
| Interface Residues: | 69, 73, 77, 222, 231, 232, 233, 234, 236, 237 |
| 3D-footprint Homologues: | 4lup_A, 5k98_B, 3dnv_B, 4z5h_A, 8cyf_B, 6lty_B, 7bhy_A |
| Binding Motifs: | SigF_1 GywTr SigF_2 GGsmAwmmTr |
| Binding Sites: | bofC_1 csfC dacF_1 gerAA_1 gpr_1 katX_2 lonB sigG_1 spoIIQ spoIIR_1 spoIVB_1 sspN_1 yhcN_1 yhfM yhfW ylbB yqhQ_2 yqzG yrrR_1 ytfI ytkD_2 yuiC ywhE_1 ywnJ_1 yyaC |
| Related annotations: | PaperBLAST |
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