Transcription Factor
Accessions: | T161877_1.02 (CISBP 1.02), P39001 (JASPAR 2024) |
Names: | T161877_1.02;, UME6, Negative transcriptional regulator of IME2, Regulator of inducer of meiosis protein 16, Transcriptional regulatory protein UME6, UME6_YEAST, Unscheduled meiotic gene expression protein 6 |
Organisms: | Saccharomyces cerevisiae |
Libraries: | CISBP 1.02 1, JASPAR 2024 2 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
Notes: | experiment type:PBM, family:Zinc cluster |
Length: | 836 |
Pfam Domains: | 769-803 Fungal Zn(2)-Cys(6) binuclear cluster domain |
Sequence: (in bold interface residues) | 1 MLDKARSQSKHMDESNAAASLLSMETTANNHHYLHNKTSRATLMNSSQDGKKHAEDEVSD 60 61 GANSRHPTISSASIESLKTTYDENPLLSIMKSTCAPNNTPVHTPSGSPSLKVQSGGDIKD 120 121 DPKENDTTTTTNTTLQDRRDSDNAVHAAASPLAPSNTPSDPKSLCNGHVAQATDPQISGA 180 181 IQPQYTATNEDVFPYSSTSTNSNTATTTIVAGAKKKIHLPPPQAPAVSSPGTTAAGSGAG 240 241 TGSGIRSRTGSDLPLIITSANKNNGKTTNSPMSILSRNNSTNNNDNNSIQSSDSRESSNN 300 301 NEIGGYLRGGTKRGGSPSNDSQVQHNVHDDQCAVGVAPRNFYFNKDREITDPNVKLDENE 360 361 SKINISFWLNSKYRDEAYSLNESSSNNASSNTDTPTNSRHANTSSSITSRNNFQHFRFNQ 420 421 IPSQPPTSASSFTSTNNNNPQRNNINRGEDPFATSSRPSTGFFYGDLPNRNNRNSPFHTN 480 481 EQYIPPPPPKYINSKLDGLRSRLLLGPNSASSSTKLDDDLGTAAAVLSNMRSSPYRTHDK 540 541 PISNVNDMNNTNALGVPASRPHSSSFPSKGVLRPILLRIHNSEQQPIFESNNSTAVFDED 600 601 QDQNQDLSPYHLNLNSKKVLDPTFESRTRQVTWNKNGKRIDRRLSAPEQQQQLEVPPLKK 660 661 SRRSVGNARVASQTNSDYNSLGESSTSSAPSSPSLKASSGLAYTADYPNATSPDFAKSKG 720 721 KNVKPKAKSKAKQSSKKRPNNTTSKSKANNSQESNNATSSTSQGTRSRTGCWICRLRKKK 780 781 CTEERPHCFNCERLKLDCHYDAFKPDFVSDPKKKQMKLEEIKKKTKEAKRRAMKKK |
Interface Residues: | 766, 777, 778, 779 |
3D-footprint Homologues: | 6o19_A, 1hwt_C, 1pyi_A, 3coq_A, 1d66_B, 7uik_T |
Binding Motifs: | MA0412.1 TsGGCGGCTAwwT M1779_1.02 mdcCgcGghk MA0412.2 wwwTAGCCGCCsArv MA0412.3 wwTAGCCGCCsA |
Binding Sites: | MA0412.2.1 MA0412.2.10 / MA0412.2.11 MA0412.2.11 / MA0412.2.12 MA0412.2.12 / MA0412.2.13 / MA0412.2.14 / MA0412.2.15 MA0412.2.13 / MA0412.2.14 / MA0412.2.15 / MA0412.2.16 MA0412.2.16 / MA0412.2.18 / MA0412.2.7 / MA0412.2.8 MA0412.2.17 / MA0412.2.19 MA0412.2.18 / MA0412.2.20 MA0412.2.19 MA0412.2.2 MA0412.2.20 MA0412.2.3 MA0412.2.4 MA0412.2.5 / MA0412.2.6 MA0412.2.6 / MA0412.2.7 MA0412.2.8 / MA0412.2.9 MA0412.2.10 / MA0412.2.9 MA0412.2.17 MA0412.2.5 MA0412.3.1 MA0412.3.10 MA0412.3.11 MA0412.3.12 / MA0412.3.14 MA0412.3.13 / MA0412.3.15 / MA0412.3.2 MA0412.3.16 / MA0412.3.7 MA0412.3.17 MA0412.3.18 MA0412.3.19 MA0412.3.20 MA0412.3.3 MA0412.3.4 MA0412.3.5 MA0412.3.6 MA0412.3.8 MA0412.3.9 |
Publications: | Pachkov M, Erb I, Molina N, van Nimwegen E. SwissRegulon: a database of genome-wide annotations of regulatory sites. Nucleic acids research 35:D127-31 (2007). [Pubmed] |
Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.