Transcription Factor
| Accessions: | PIF3 (Athamap 20091028), PIF3 (ArabidopsisPBM 20140210), T012356_1.02 (CISBP 1.02), O80536 (JASPAR 2024) |
| Names: | PIF3, PAP3, POC1, T012356_1.02;, AtbHLH8, Basic helix-loop-helix protein 8, bHLH 8, bHLH transcription factor bHLH008, Phytochrome-associated protein 3, Phytochrome-interacting factor 3, PIF3_ARATH, Transcription factor EN 100, Transcription factor PIF3 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | Athamap 20091028 1, ArabidopsisPBM 20140210 2, CISBP 1.02 3, JASPAR 2024 4 1 Bulow L, Engelmann S, Schindler M, Hehl R. AthaMap, integrating transcriptional and post-transcriptional data. Nucleic acids research 37:D983-6 (2009). [Pubmed] 2 Franco-Zorrilla J.M, López-Vidriero I, Carrasco J.L, Godoy M, Vera P, Solano R. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proceedings of the National Academy of Sciences of the United States of America : (2014). [Pubmed] 3 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] 4 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | bHLH, experiment type:PBM, family:bHLH |
| Length: | 524 |
| Pfam Domains: | 347-393 Helix-loop-helix DNA-binding domain |
| Sequence: (in bold interface residues) | 1 MPLFELFRLTKAKLESAQDRNPSPPVDEVVELVWENGQISTQSQSSRSRNIPPPQANSSR 60 61 AREIGNGSKTTMVDEIPMSVPSLMTGLSQDDDFVPWLNHHPSLDGYCSDFLRDVSSPVTV 120 121 NEQESDMAVNQTAFPLFQRRKDGNESAPAASSSQYNGFQSHSLYGSDRARDLPSQQTNPD 180 181 RFTQTQEPLITSNKPSLVNFSHFLRPATFAKTTNNNLHDTKEKSPQSPPNVFQTRVLGAK 240 241 DSEDKVLNESVASATPKDNQKACLISEDSCRKDQESEKAVVCSSVGSGNSLDGPSESPSL 300 301 SLKRKHSNIQDIDCHSEDVEEESGDGRKEAGPSRTGLGSKRSRSAEVHNLSERRRRDRIN 360 361 EKMRALQELIPNCNKVDKASMLDEAIEYLKSLQLQVQIMSMASGYYLPPAVMFPPGMGHY 420 421 PAAAAAMAMGMGMPYAMGLPDLSRGGSSVNHGPQFQVSGMQQQPVAMGIPRVSGGGIFAG 480 481 SSTIGNGSTRDLSGSKDQTTTNNNSNLKPIKRKQGSSDQFCGSS |
| Interface Residues: | 348, 349, 351, 352, 355, 356, 378, 393 |
| 3D-footprint Homologues: | 7rcu_E, 6g1l_A, 5eyo_A, 7ssa_L, 5nj8_D, 4h10_A, 7d8t_A, 5gnj_I, 5v0l_A, 7f2f_B, 5i50_B, 1am9_A, 7xi3_A, 4zpk_A, 4h10_B, 8osl_P, 1an4_A, 7z5k_B, 8osl_O, 7xi3_B, 7xhv_B, 5nj8_C, 5v0l_B |
| Binding Motifs: | PIF3(1) gkrggmCACGTGrmswCk PIF3(2) rdrvCCACGTGGvmvsy PIF3 sCCACGTGGs MA0560.1 dgCCACGTGr M0151_1.02 cAYGTGs MA0560.2 CCACGTG |
| Binding Sites: | MA0560.1.1 MA0560.1.10 MA0560.1.11 MA0560.1.12 MA0560.1.13 MA0560.1.14 MA0560.1.15 MA0560.1.16 MA0560.1.17 MA0560.1.18 MA0560.1.19 MA0560.1.2 MA0560.1.20 MA0560.1.3 MA0560.1.4 MA0560.1.5 MA0560.1.6 MA0560.1.7 MA0560.1.8 MA0560.1.9 MA0560.2.1 MA0560.2.10 MA0560.2.11 MA0560.2.12 MA0560.2.13 MA0560.2.14 MA0560.2.15 MA0560.2.16 MA0560.2.17 MA0560.2.18 MA0560.2.19 MA0560.2.2 MA0560.2.20 MA0560.2.3 MA0560.2.4 MA0560.2.5 MA0560.2.6 MA0560.2.7 MA0560.2.8 MA0560.2.9 |
| Publications: | Martinez-Garcia J. F., Huq E., Quail P. H. Direct targeting of light signals to a promoter element-bound transcription factor. Science 288:859-863 (2000). [Pubmed] |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.