Transcription Factor
| Accessions: | Q9M2E8 (JASPAR 2024), T11448 (AthalianaCistrome v4_May2016) |
| Names: | HD-ZIP protein HDG1, HDG1_ARATH, Homeobox-leucine zipper protein HDG1, Homeodomain GLABRA 2-like protein 1, Homeodomain transcription factor HDG1, Protein HOMEODOMAIN GLABROUS 1, AT3G61150, HDG1, T11448; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1, AthalianaCistrome v4_May2016 2 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:Homeobox |
| Length: | 808 |
| Pfam Domains: | 111-166 Homeobox domain 320-538 START domain |
| Sequence: (in bold interface residues) | 1 MNFNGFLDDGAGASKLLSDAPYNNHFSFSAVDTMLGSAAIAPSQSLPFSSSGLSLGLQTN 60 61 GEMSRNGEIMESNVSRKSSRGEDVESRSESDNAEAVSGDDLDTSDRPLKKKKRYHRHTPK 120 121 QIQDLESVFKECAHPDEKQRLDLSRRLNLDPRQVKFWFQNRRTQMKTQIERHENALLRQE 180 181 NDKLRAENMSVREAMRNPMCGNCGGPAVIGEISMEEQHLRIENSRLKDELDRVCALTGKF 240 241 LGRSNGSHHIPDSALVLGVGVGSGGCNVGGGFTLSSPLLPQASPRFEISNGTGSGLVATV 300 301 NRQQPVSVSDFDQRSRYLDLALAAMDELVKMAQTREPLWVRSSDSGFEVLNQEEYDTSFS 360 361 RCVGPKQDGFVSEASKEAGTVIINSLALVETLMDSERWAEMFPSMVSRTSTTEIISSGMG 420 421 GRNGALHLMHAELQLLSPLVPVRQVSFLRFCKQHAEGVWAVVDVSIDSIREGSSSSCRRL 480 481 PSGCLVQDMANGYSKVTWIEHTEYDENHIHRLYRPLLRCGLAFGAHRWMAALQRQCECLT 540 541 ILMSSTVSTSTNPSPINCNGRKSMLKLAKRMTDNFCGGVCASSLQKWSKLNVGNVDEDVR 600 601 IMTRKSVNNPGEPPGIILNAATSVWMPVSPRRLFDFLGNERLRSEWDILSNGGPMKEMAH 660 661 IAKGHDRSNSVSLLRASAINANQSSMLILQETSIDAAGAVVVYAPVDIPAMQAVMNGGDS 720 721 AYVALLPSGFAILPNGQAGTQRCAAEERNSIGNGGCMEEGGSLLTVAFQILVNSLPTAKL 780 781 TVESVETVNNLISCTVQKIKAALHCDST |
| Interface Residues: | 111, 112, 113, 114, 115, 116, 117, 152, 153, 155, 156, 159, 160, 163, 164, 166, 167 |
| 3D-footprint Homologues: | 1puf_B, 3d1n_M, 5zfz_A, 4cyc_A, 5zjt_E, 2h1k_B, 2lkx_A, 1puf_A, 1nk2_P, 6fqp_B, 2ld5_A, 1mnm_C, 2r5y_A, 6es3_K, 7q3o_C, 1k61_B, 3l1p_A, 3a01_E, 5jlw_D, 7xrc_C, 1e3o_C, 2xsd_C, 1au7_A, 4j19_B, 1le8_A, 1ig7_A, 1du0_A, 3rkq_B, 1jgg_B, 4xrs_G, 6wig_A, 1zq3_P, 8g87_X, 5flv_I, 1o4x_A, 7psx_B, 1fjl_B, 6fqq_E, 1b72_A, 5hod_A, 3lnq_A, 6a8r_A, 4qtr_D, 3cmy_A, 2hdd_A, 2hos_A, 6m3d_C |
| Binding Motifs: | M0427 / MA1369.1 ryAwTTAATGm M0437 ryAwTTAATGm MA1369.2 yAwTTAATGm |
| Binding Sites: | MA1369.1.1 MA1369.1.10 MA1369.1.11 MA1369.1.12 MA1369.1.13 MA1369.1.14 MA1369.1.15 MA1369.1.16 MA1369.1.17 MA1369.1.18 MA1369.1.19 MA1369.1.2 MA1369.1.20 MA1369.1.3 MA1369.1.4 MA1369.1.5 MA1369.1.6 MA1369.1.7 MA1369.1.8 MA1369.1.9 MA1369.2.1 MA1369.2.10 MA1369.2.11 MA1369.2.12 MA1369.2.13 MA1369.2.14 MA1369.2.15 MA1369.2.16 MA1369.2.17 MA1369.2.18 MA1369.2.19 MA1369.2.2 MA1369.2.20 MA1369.2.3 MA1369.2.4 MA1369.2.5 MA1369.2.6 MA1369.2.7 MA1369.2.8 MA1369.2.9 |
| Publications: | Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.