Transcription Factor

Accessions: ComK (DBTBS 1.0)
Names: ComK, E8VHF1_BACST
Organisms: Bacillus subtilis
Libraries: DBTBS 1.0 1
1 Sierro N, Makita Y, de Hoon M, Nakai K. DBTBS: a database of transcriptional regulation in Bacillus subtilis containing upstream intergenic conservation information. Nucleic acids research 36:D93-6 (2008). [Pubmed]
Uniprot: E8VHF1
Length: 317
Pfam Domains: 27-317 Basic membrane protein
Sequence:
(in bold interface residues)
1 MITRLVMIFSVLLLLSGCGQTPFKGKIEKVGMLFPDTINDLVWGTKGYKGLLNIQSKYNV 60
61 DVYYKEGVKTEEDIINAIEDFHKRGVNLLYGHGSEYAEVFNLVGEDYPDMEFVISNAKAK 120
121 ADNVTSVHFSGEAMGFFGGMTAAHMSKTNQVGVIASFTWQPEVDGFIKGAKYENPDIEVN 180
181 TKYTDHWDDDTTAVKLYQKMKNEGADVVYPAGDGYNVPVIQQIKKDGLYAIGYVTDQSDL 240
241 GENTVLTSTVQNVDKAYEIIAEQFNKGTLEGGDHYYDLNTGVVEMGTFSPLVDQDFQQRI 300
301 AKLIKTYNKTGELPKNE
Interface Residues: 8, 9, 12, 298, 299, 302, 303, 305, 306
3D-footprint Homologues: 5vvr_M, 8ee9_F
Binding Motifs: ComK_1 AAAA
ComK_2 TTTT
Binding Sites: addB_1
addB_2
comC_1
comC_2
comEA_1
comEA_2
comFA_1
comFA_2
comGA_1
comGA_2
comK_3
comK_4
cspB_1
nucA_1
nucA_2
radC_1
radC_2
rapH_1
recA_1
recA_2
recA_3
recA_4
rok_1
rok_2
smf_1
smf_2
thdF_1
thdF_2
ybdK_1
ybdK_2
yhjB_1
yhjB_2
yneB_1
yneB_2
yvrP_1
yvrP_2
ywpH_1
ywpH_2
yyaF_1
yyaF_2
Related annotations: PaperBLAST

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