Transcription Factor
| Accessions: | UP00396A (UniPROBE 20160601) |
| Names: | "F29F11.5, CEH-22, Homeobox protein ceh-22, Homeobox protein ceh-22" |
| Organisms: | Caenorhabditis elegans |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Description: | Homeobox protein ceh-22: C.Elegans Homeobox |
| Length: | 346 |
| Pfam Domains: | 190-246 Homeobox domain |
| Sequence: (in bold interface residues) | 1 MFNVSALAAATPSIASVSSVASPSEQHGLSTSVGVGVNDTTSRTGDGGAASSASSASAAP 60 61 QQQSQSALHNKLEAKWDTLLPTDTNLQCSTWPDSIPLLAGYSATPTFSFDPCTYGSYDPS 120 121 AYFASNGIAGSMYTLPDQFPRSENDMLDNSNTSNGNKSDKDGIKLEDEDEILEDEENDEE 180 181 DDGTGKRKKRKRRVLFTKAQTYELERRFRSQKYLSAPEREALAMQIRLTPTQVKIWFQNH 240 241 RYKTKKSHTDKPINAALLTTMPNAFSSQSTAASFPTRAMPIPMLVRDSSARSSDISSTSP 300 301 YTVAFGSANSGYLPTPSAYLPATSGYFSNGPSAASSYMTNTQWWPS |
| Interface Residues: | 190, 191, 192, 193, 195, 231, 232, 234, 235, 238, 239, 242, 243, 246 |
| 3D-footprint Homologues: | 2h1k_B, 5zfz_A, 1puf_A, 1ig7_A, 3cmy_A, 3d1n_M, 6a8r_A, 1fjl_B, 2lkx_A, 6m3d_C, 1jgg_B, 1nk2_P, 1zq3_P, 3lnq_A, 1mnm_C, 7q3o_C, 2ld5_A, 6es3_K, 3a01_E, 1au7_A, 3rkq_B, 5flv_I, 2hdd_A, 1b72_A, 5zjt_E, 4cyc_A, 2r5y_A, 1puf_B, 7psx_B, 2hos_A, 5jlw_D, 4xrs_G, 1le8_A, 7xrc_C, 2xsd_C, 8g87_X, 5hod_A, 1du0_A, 4qtr_D, 1k61_B, 1o4x_A |
| Binding Motifs: | UP00396A_1 / UP00396A_2 tsdywrrCCACTTsAmawtwmk |
| Binding Sites: | AAGTACTC AAGTACTT ACACTTGA AGTACTTA AGTACTTG ATAAGTGG CACTTAAG CACTTCAA CACTTGAA CACTTGAC CACTTGAG CCACTCGA CCACTTAA CCACTTCA CCACTTGA GCACTTGA GGTACTTA GTACTTAA GTACTTCA GTACTTGA |
| Publications: | Berger M.F, Philippakis A.A, Qureshi A.M, He F.S, Estep P.W, Bulyk M.L. Compact, universal DNA microarrays to comprehensively determine transcription-factor binding site specificities. Nature biotechnology 24:1429-35 (2006). [Pubmed] |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.