Transcription Factor
| Accessions: | F4IPE3 (JASPAR 2024) |
| Names: | AtIDD15, IDD15_ARATH, Protein indeterminate-domain 15, Protein SHOOT GRAVITROPISM 5, Zinc finger protein SHOOT GRAVITROPISM 5 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Uniprot: | F4IPE3 |
| Length: | 445 |
| Sequence: (in bold interface residues) | 1 MRTDQVMLSNKNTNTCCVVSSSSSDPFLSSSENGVTTTNTSTQKRKRRPAGTPDPDAEVV 60 61 SLSPRTLLESDRYICEICNQGFQRDQNLQMHRRRHKVPWKLLKRDNNIEVKKRVYVCPEP 120 121 TCLHHNPCHALGDLVGIKKHFRRKHSNHKQWVCERCSKGYAVQSDYKAHLKTCGTRGHSC 180 181 DCGRVFSRVESFIEHQDNCSARRVHREPPRPPQTAVTVPACSSRTASTVSTPSSETNYGG 240 241 TVAVTTPQPLEGRPIHQRISSSILTNSSNNLNLELQLLPLSSNQNPNQENQQQKVKEPSH 300 301 HHNHNHDTTNLNLSIAPSSSYQHYNNFDRIKEIMASEQIMKIAMKEKAYAEEAKREAKRQ 360 361 REIAENEFANAKKIRQKAQAELERAKFLKEQSMKKISSTIMQVTCQTCKGQFQAVAVPAA 420 421 TADETSLVVSYMSSANTDGELENGF |
| Interface Residues: | 55, 58, 59, 62, 83, 84, 85, 86, 87, 89, 90, 92, 93, 94, 104, 106, 107, 110, 131, 133, 134, 135, 136, 137, 138, 139, 140, 144, 161, 162, 163, 164, 165, 166, 167, 168, 169, 187, 188, 189, 190, 191, 194 |
| 3D-footprint Homologues: | 8cuc_F, 7y3l_A, 2i13_A, 6jnm_A, 5ei9_F, 5v3j_F, 2gli_A, 6u9q_A, 7y3m_I, 6e94_A, 6a57_A, 2jpa_A, 6ml4_A, 4m9v_C, 1mey_C, 7w1m_H, 2kmk_A, 8ssq_A, 8h9h_G, 7eyi_G, 2wbs_A |
| Binding Motifs: | MA1159.1 araAwAAGACAAAAw MA1159.2 raAwAAGACAAAA |
| Binding Sites: | MA1159.1.1 MA1159.1.10 MA1159.1.11 MA1159.1.12 MA1159.1.13 MA1159.1.14 MA1159.1.15 MA1159.1.16 MA1159.1.17 MA1159.1.18 MA1159.1.19 MA1159.1.2 MA1159.1.20 MA1159.1.3 MA1159.1.4 MA1159.1.5 MA1159.1.6 MA1159.1.7 MA1159.1.8 MA1159.1.9 MA1159.2.1 MA1159.2.10 MA1159.2.11 MA1159.2.12 MA1159.2.13 MA1159.2.14 MA1159.2.15 MA1159.2.16 MA1159.2.17 MA1159.2.18 MA1159.2.19 MA1159.2.2 MA1159.2.20 MA1159.2.3 MA1159.2.4 MA1159.2.5 MA1159.2.6 MA1159.2.7 MA1159.2.8 MA1159.2.9 |
| Publications: | Cui D, Zhao J, Jing Y, Fan M, Liu J, Wang Z, Xin W, Hu Y. The arabidopsis IDD14, IDD15, and IDD16 cooperatively regulate lateral organ morphogenesis and gravitropism by promoting auxin biosynthesis and transport. PLoS Genet : (2013;9(9):e1003759.). [Pubmed] |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.