Transcription Factor
| Accessions: | T144589_1.02 (CISBP 1.02) |
| Names: | Hmg20b, T144589_1.02; |
| Organisms: | Mus musculus |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:Sox |
| Length: | 246 |
| Pfam Domains: | 17-83 Domain of unknown function (DUF1898) 20-87 HMG (high mobility group) box |
| Sequence: (in bold interface residues) | 1 XKKRGWPKGKKRKKILPNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSK 60 61 LQPAEKQRYLDEAEKEKQQYLKELWAYQQSEAYKVCTEKIQENKIKKEDSSSGLMNTLLN 120 121 GHKGVDCDGFSTFDVPIFTEEFLDQNKAREAELRRLRKMNVAFEEQNAVLQRHTQSMSSA 180 181 RERLEQELALEERRTLALQQQLQAVRQALTASFASLPVPGAQPRPHLRSRPHFSIRPRPS 240 241 SDPPPR |
| Interface Residues: | 8, 10, 13, 22, 25, 27, 28, 31, 35, 46, 47, 48, 51 |
| 3D-footprint Homologues: | 2gzk_A, 3tmm_A, 1j5n_A, 2lef_A, 3u2b_C, 1o4x_B, 4s2q_D, 1qrv_A, 1hry_A, 4y60_C, 3tq6_B, 6jrp_D, 7m5w_A, 3f27_D, 7zie_A, 1ckt_A |
| Binding Motifs: | M1582_1.02 awawATAATwa |
| Related annotations: | PaperBLAST |
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