Transcription Factor

						

			
Accessions: T001243_1.02 (CISBP 1.02), Q6EP77 (JASPAR 2024)

			
Names: LOC_Os02g45450, T001243_1.02;, Dehydration-responsive element-binding protein 1G, DRE1G_ORYSJ, Protein DREB1G
Organisms: Oryza sativa, Oryza sativa Japonica Group
Libraries: CISBP 1.02 1, JASPAR 2024 2
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]

2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: experiment type:PBM, family:AP2
Length: 224
Pfam Domains:    53-103 AP2 domain
Sequence: 
(in bold interface residues)		   1 MDVSAALSSDYSSGTPSPVAADADDGSSAYMTVSSAPPKRRAGRTKFKETRHPVFKGVRR   60
  61 RNPGRWVCEVREPHGKQRIWLGTFETAEMAARAHDVAALALRGRAACLNFADSPRRLRVP  120
 121 PIGASHDDIRRAAAEAAEAFRPPPDESNAATEVAAAASGATNSNAEQFASHPYYEVMDDG  180
 181 LDLGMQGYLDMAQGMLIDPPPMAGDPAVGSGEDDNDGEVQLWSY
Interface Residues: 59, 60, 61, 62, 63, 67, 69, 71, 74, 77, 78, 80
3D-footprint Homologues: 1gcc_A, 5wx9_A, 7wq5_A, 7et4_D
Binding Motifs: M0042_1.02 atGCCGACAt
MA1032.1 atGCCGACAt
MA1032.2 tGCCGACA
			
Publications: Magnani E, Sjölander K, Hake S. From endonucleases to transcription factors: evolution of the AP2 DNA binding domain in plants. Plant Cell 16:2265-77 (2004). [Pubmed]
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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