Transcription Factor
| Accessions: | T101509_1.02 (CISBP 1.02) |
| Names: | HOXC, T101509_1.02; |
| Organisms: | Nematostella vectensis |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:Homeodomain |
| Length: | 231 |
| Pfam Domains: | 100-156 Homeobox domain |
| Sequence: (in bold interface residues) | 1 MNYSALFPSFDTSVTWDPSRHHLKNTENPGTLPETQGFGAGLFLDTYTSHIGRDFDGPIG 60 61 SIPVGSSNRESLPNYLLQPIYPWMRTKKSGSRGIGGKHTKRYRTSYTNRQLLELEKEFHY 120 121 NKYLCGTRRRELANAMKLTERQVKVWFQNRRMKLKKDEKQKEDGPSAFPDYDVMKSLPRL 180 181 PRLLPTYATQTEGYPPIEAVEHLDSQSQNALRHYTYSNYSMLTHALNTVLQ |
| Interface Residues: | 100, 101, 102, 103, 141, 142, 144, 145, 148, 149, 152, 153, 156 |
| 3D-footprint Homologues: | 1fjl_B, 1nk2_P, 5zfz_A, 2h1k_B, 1puf_A, 6a8r_A, 3cmy_A, 1zq3_P, 1jgg_B, 3lnq_A, 2lkx_A, 6es3_K, 3d1n_M, 2ld5_A, 7q3o_C, 5jlw_D, 3rkq_B, 2r5y_A, 1puf_B, 4xrs_G, 2hos_A, 1b72_A, 4cyc_A, 1ig7_A, 6m3d_C, 5flv_I, 3l1p_A, 5zjt_E, 4j19_B, 3a01_E, 7psx_B, 5hod_A, 2hdd_A, 7xrc_C, 2xsd_C, 1e3o_C, 1le8_A, 1o4x_A, 1du0_A, 4qtr_D |
| Binding Motifs: | M1198_1.02 yTAATTAn |
| Related annotations: | PaperBLAST |
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