Transcription Factor

						

			
Accessions: T138647_1.02 (CISBP 1.02)

			
Names: amel4_ncbi_hmm7004, T138647_1.02;
Organisms: Apis mellifera
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:PBM, family:RFX
Length: 825
Pfam Domains:   330-397 RFX DNA-binding domain
Sequence: 
(in bold interface residues)		   1 MKTDTSFHKRGTNSGSDTVGVERGEGVIAMTTTGAQYALAASTRANNNGGNSTTVGVEPK   60
  61 PSVVVVTTSSSSGSGNAAQSQSTRGQQLITVVTSSDPSSPNNLQPIQDPLEAAADSSNGS  120
 121 TGTPAHVTAQVVVNTTHSGQHTLVDSDAASTSAGTIVSGSPHFITVTVSGEPEAVGSESV  180
 181 SHPTYVQYVEGDGSTYIPTNGQMTYPVYAVGEAGAMYTPASSQYYTPATTPVTYAQVTGQ  240
 241 GSNSTTGQLLSQGNGTYLIQQSVVDGDPTAHALISAATARASPQTENTETVVSGGGGAYL  300
 301 ISGNSGNTTVTVEDAATAAANMTHATRVSQATVHWLLENYETADGVSLPRSTLYNHYLRH  360
 361 CSENKLDPVNAASFGKLIRSVFLGLRTRRLGTRGNSKYHYYGIRVKPSSPLVMLNEDGTP  420
 421 RQQQNTNSQTKRFKFVNQKQDTTYENNPHSNTNISSNNSPPQYHQYLGEASGAIPEFPEI  480
 481 IVGHSSSLPEDCTLEDIDTFRSIYREHCEAFLDAVLNFEFATVESLWREFWRSQDNNNGD  540
 541 ECEEEKYLSKTKLYQMCKCSEVQDFIRKVDYTFYQNLVEVLMPNVLRPIPSSLTQSIRNF  600
 601 AKGLESWLTSAMADCPEEMTQIKLTAVSAFAQTLRRYTSLNHLAQAARAVLQNSSQINQM  660
 661 LADLNRVDFHNVQEQASWVCQCDYAMVQRLEADFKVTLQQQNSLEDWAIWLKSVVTKVLK  720
 721 PFEEKPTFAKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQV  780
 781 AVATGTTPIAVMGDKSQNCSLISAFGATSNGDTSNANQPKRMKLS
Interface Residues: 372, 376, 389, 393, 398
3D-footprint Homologues: 1dp7_P
Binding Motifs: M1524_1.02 schTrGyaAC
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.